Jatropha Genome Database

JcCB0071361.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0071361.20 - phase: 2 /partial
         (169 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032375001 assembled CDS                                       151   2e-37

>GSVIVT01032375001 assembled CDS
          Length = 221

 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/178 (48%), Positives = 106/178 (59%), Gaps = 11/178 (6%)

Query: 1   SKLICKLTGDTVNKSEEHIWKHINGKRFLNKLEQKETEKV--------EGKQQEEEAKSS 52
           SKLICKLTGDT+NK+EEHIWKHING+RFLNKLEQKE EK         +G Q +++    
Sbjct: 42  SKLICKLTGDTINKTEEHIWKHINGRRFLNKLEQKEAEKQMSNRKVVDKGDQMQQKDGEK 101

Query: 53  MDXXXXXXXXXXXXXXXXXPVDEIISEVRNFSDKDSDSEEVDFWIPPAGEPWDFDDGGDR 112
                               + E      +  DK+SD+EE +FW+PP G+ WD DDGGDR
Sbjct: 102 HKKKDKKKKKKKQEKEVDENISEARKSEVDEIDKNSDTEEAEFWMPPVGDRWDSDDGGDR 161

Query: 113 WXXXXXXX---XXXXXXXXAVEDNGKESEELSKCTKRMSIEIGPSSFASRKKKTKKNS 167
           W                  A E++G ES ELSK TKR+SIE+GPSSFASRKKK+K NS
Sbjct: 162 WGSDSDLECDIDEVNGTDGAEEEHGNESRELSKRTKRLSIEVGPSSFASRKKKSKTNS 219