Jatropha Genome Database

JcCB0071361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0071361.10 + phase: 1 /partial
         (100 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01014838001 assembled CDS                                       113   1e-26
GSVIVT01032376001 assembled CDS                                       113   2e-26
GSVIVT01001804001 assembled CDS                                       104   6e-24
GSVIVT01001805001 assembled CDS                                       103   2e-23
GSVIVT01008517001 assembled CDS                                       103   2e-23
GSVIVT01008519001 assembled CDS                                       100   2e-22

>GSVIVT01014838001 assembled CDS
          Length = 479

 Score =  113 bits (283), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 56/100 (56%), Positives = 67/100 (67%), Gaps = 24/100 (24%)

Query: 1   NCAIKAISLLLSKGVPESNIIFLNLIAVSHSDTNCSSKLQTLFLPYKYDLQAPQGIHAVC 60
           N A++AISLL+ KGVPESNIIFLNLI+                        APQG+H VC
Sbjct: 395 NSAVQAISLLIQKGVPESNIIFLNLIS------------------------APQGVHVVC 430

Query: 61  NKYPKVKIVTSEIDATLDNDFRVIPGMGVFGDRYFGTDEE 100
             +P++KIVTSEID  L+ DFRVIPGMG FGDRYFGTD++
Sbjct: 431 KSFPRIKIVTSEIDVGLNEDFRVIPGMGEFGDRYFGTDDD 470


>GSVIVT01032376001 assembled CDS
          Length = 448

 Score =  113 bits (282), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/98 (61%), Positives = 66/98 (67%), Gaps = 24/98 (24%)

Query: 1   NCAIKAISLLLSKGVPESNIIFLNLIAVSHSDTNCSSKLQTLFLPYKYDLQAPQGIHAVC 60
           N A+KAISLLLSKGV ESNIIFLNLIA                        AP+GIHAVC
Sbjct: 375 NSAVKAISLLLSKGVAESNIIFLNLIA------------------------APEGIHAVC 410

Query: 61  NKYPKVKIVTSEIDATLDNDFRVIPGMGVFGDRYFGTD 98
            K+P +KIVTSEID +L+ D RVIPGMG FGDRYFGTD
Sbjct: 411 KKFPTLKIVTSEIDMSLNKDLRVIPGMGEFGDRYFGTD 448


>GSVIVT01001804001 assembled CDS
          Length = 896

 Score =  104 bits (260), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 64/99 (64%), Gaps = 24/99 (24%)

Query: 1   NCAIKAISLLLSKGVPESNIIFLNLIAVSHSDTNCSSKLQTLFLPYKYDLQAPQGIHAVC 60
           N A +AI LL+ KGVPES+IIFLNLI+                        AP+GIH VC
Sbjct: 822 NSAGQAIELLIQKGVPESHIIFLNLIS------------------------APEGIHCVC 857

Query: 61  NKYPKVKIVTSEIDATLDNDFRVIPGMGVFGDRYFGTDE 99
            ++P +KIVTSEID  L+ +FRVIPGMG FGDRYFGTD+
Sbjct: 858 KRFPSLKIVTSEIDVALNEEFRVIPGMGEFGDRYFGTDD 896


>GSVIVT01001805001 assembled CDS
          Length = 267

 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 64/99 (64%), Gaps = 24/99 (24%)

Query: 1   NCAIKAISLLLSKGVPESNIIFLNLIAVSHSDTNCSSKLQTLFLPYKYDLQAPQGIHAVC 60
           N A +AI LL+ KGVPES+IIFLNLI+                        AP+GIH VC
Sbjct: 193 NSAGQAIELLIQKGVPESHIIFLNLIS------------------------APEGIHCVC 228

Query: 61  NKYPKVKIVTSEIDATLDNDFRVIPGMGVFGDRYFGTDE 99
            ++P +KIVTSEID  L+ +FRVIPGMG FGDRYFGTD+
Sbjct: 229 KRFPSLKIVTSEIDVALNEEFRVIPGMGEFGDRYFGTDD 267


>GSVIVT01008517001 assembled CDS
          Length = 472

 Score =  103 bits (256), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 65/99 (65%), Gaps = 24/99 (24%)

Query: 1   NCAIKAISLLLSKGVPESNIIFLNLIAVSHSDTNCSSKLQTLFLPYKYDLQAPQGIHAVC 60
           N A +AI LL+ KGVPES+IIFLNLI+                        AP+GI  VC
Sbjct: 392 NSANQAIELLIKKGVPESSIIFLNLIS------------------------APEGIQCVC 427

Query: 61  NKYPKVKIVTSEIDATLDNDFRVIPGMGVFGDRYFGTDE 99
           N++P +KIVTSEIDA L+ +FRVIPG+G FGDRYFGTD+
Sbjct: 428 NRFPSLKIVTSEIDAKLNEEFRVIPGLGEFGDRYFGTDD 466


>GSVIVT01008519001 assembled CDS
          Length = 318

 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 64/99 (64%), Gaps = 24/99 (24%)

Query: 1   NCAIKAISLLLSKGVPESNIIFLNLIAVSHSDTNCSSKLQTLFLPYKYDLQAPQGIHAVC 60
           N A +AI LL+ KGVPES+IIFLNLI+                        AP+GI  VC
Sbjct: 238 NSANQAIELLIKKGVPESSIIFLNLIS------------------------APEGIQCVC 273

Query: 61  NKYPKVKIVTSEIDATLDNDFRVIPGMGVFGDRYFGTDE 99
           N++P +KIVTSEIDA L+ +FRVIPG+G FGD YFGTD+
Sbjct: 274 NRFPSLKIVTSEIDAKLNEEFRVIPGLGEFGDSYFGTDD 312