Jatropha Genome Database

JcCB0071301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0071301.10 - phase: 0 
         (198 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000259001 assembled CDS                                       343   4e-95
GSVIVT01033008001 assembled CDS                                        52   1e-07
GSVIVT01008621001 assembled CDS                                        50   9e-07

>GSVIVT01000259001 assembled CDS
          Length = 483

 Score =  343 bits (879), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 160/198 (80%), Positives = 177/198 (89%)

Query: 1   MSSTVLHIMNSALEWVTVALDAPSARAVVFGVHIGGHLFVEGLLFVVILFLLTQKSYKPP 60
           M+S V  I+ +A++WVT+A +AP  RAVVFGV IGGHLFVE +L + I+FLL+QKSYKPP
Sbjct: 1   MASAVTDIVTTAVDWVTLAFNAPLPRAVVFGVQIGGHLFVEVVLLLAIIFLLSQKSYKPP 60

Query: 61  KRPLTKKEIDELCNEWVPEPLIPAISEEMQHEPPALESAAGPHTKINGKEVVNFASANYL 120
           KRPLTKKEIDELC EWVPE LIP ++EEMQ EPP LESAAGPHT INGKEVVNF SANYL
Sbjct: 61  KRPLTKKEIDELCEEWVPESLIPPLTEEMQFEPPVLESAAGPHTVINGKEVVNFTSANYL 120

Query: 121 GLIGHEKLIESCTSALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPNSILYSYGLS 180
           GLIGHEKL+ESCT+ALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTP+SILYSYGLS
Sbjct: 121 GLIGHEKLLESCTAALEKYGVGSCGPRGFYGTIDVHLDCEARIAKFLGTPDSILYSYGLS 180

Query: 181 TTFSTIPCFCKKGDIIVV 198
           T FS IP FCK+GDIIVV
Sbjct: 181 TMFSAIPAFCKRGDIIVV 198


>GSVIVT01033008001 assembled CDS
          Length = 489

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 107 NGKEVVNFASANYLGLIGHEKLIESCT----SALEKYGVGSCGPRGFYGTIDVHLDCEAR 162
           N    +N  S NYLG    +   E CT     +L+K+   +C  R   GTI +H + E  
Sbjct: 98  NISRCLNLGSYNYLGFAASD---EYCTPRVIESLKKFSPSTCSSRADGGTIMMHNELEKY 154

Query: 163 IAKFLGTPNSILYSYGLSTTFSTIPCFCKKGDIIV 197
           +A F+G P +I++  G  T  + +P    KG +I+
Sbjct: 155 VANFVGKPAAIVFGMGYVTNSAILPVLISKGGLII 189


>GSVIVT01008621001 assembled CDS
          Length = 513

 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 9/98 (9%)

Query: 104 TKINGKEVVNFASANYLGLIGHEKLIESCT----SALEKYGVGSCGPRGFYGTIDVHLDC 159
           TKI+  + +N  S NYLG    +   E CT     +L+++  G+C  R   GT  +H + 
Sbjct: 97  TKIS--KCLNLGSYNYLGFAASD---EFCTPRVIESLKRFSPGTCSTRVDGGTTTLHKEV 151

Query: 160 EARIAKFLGTPNSILYSYGLSTTFSTIPCFCKKGDIIV 197
           E  +A F+G P +I++  G  T  + +P    KG +I+
Sbjct: 152 EECVANFVGKPAAIVFGMGYVTNSAILPVLIGKGGLII 189