Jatropha Genome Database

JcCB0070971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0070971.10 + phase: 0 /partial
         (370 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028303001 assembled CDS                                       266   1e-71
GSVIVT01024251001 assembled CDS                                        61   8e-10

>GSVIVT01028303001 assembled CDS
          Length = 618

 Score =  266 bits (680), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 169/372 (45%), Positives = 217/372 (58%), Gaps = 56/372 (15%)

Query: 1   GDEIPEAMLPEPFNRSKQPAVESNTLETXXXXXXXXXXXXPVETGTLEKHQPAAVASHLS 60
           GDEIPE  LPEPF++SKQ  + SN ++             P ET       PA       
Sbjct: 301 GDEIPEETLPEPFSQSKQ-DLHSNMIKDSYSSL-------PAETSC----DPA------- 341

Query: 61  QSFKKRFSQKVAKSESENACIYSPMTCSRQSISPVLEETSLSEPSLITVSSELTDGNKDS 120
                 FS +++    ++               P L ++S +E  + TV+      +  +
Sbjct: 342 -----NFSLQLSDLPVQD---------------PYLNKSSSNEEVVATVAPSPVKSSSPA 381

Query: 121 TFCNSSIGEPMACLLATPCKDMDSINCRDSSAEEIASFQSTPAKLASTPAALKSATPALR 180
                    P++   ATP K  DS + +D  + +    Q TPAKLA +PA L + TP+L+
Sbjct: 382 HL-------PLSHPPATPLKKTDSTDNQDFCSMKTPDIQVTPAKLAFSPARLMTMTPSLQ 434

Query: 181 PPKRCYMSPDEDSSSLADKLVRRPPRARSLNFETPVKN--VKNELNGMENVSADNHXXXX 238
           PPKRC MSP +DS++  +KLVRRP R+RSL F+TPVK   +K E+N   ++S DN     
Sbjct: 435 PPKRCLMSPHDDSTNSPNKLVRRPARSRSLKFDTPVKGAEIKEEVNEKGSLSVDND---- 490

Query: 239 XXXXILNILPESLLQSIREKERKVQEERDPAISLAKRRRQMVACLPKLFNVIHFLFQSIN 298
               IL+ILPE+LL+SIREKERK  EE+DPAIS AKRRR+M+  LPKLFN+IHFLFQSIN
Sbjct: 491 ----ILDILPENLLESIREKERKAIEEQDPAISQAKRRREMIVGLPKLFNMIHFLFQSIN 546

Query: 299 RSVITKEELIHKIIAGHSDIVDRRXXXXXXXXXXXXXXXWISEKSASSGDLLFCINKMSS 358
           RSV+TKEEL+HKI+A H DIVDRR               WISEK ASSGDLL CI K SS
Sbjct: 547 RSVVTKEELMHKILASHCDIVDRREVEEQLKLLQELVPEWISEKLASSGDLLLCIKKTSS 606

Query: 359 AENIRSRLEEAK 370
            E+IR RL EAK
Sbjct: 607 PESIRQRLMEAK 618


>GSVIVT01024251001 assembled CDS
          Length = 458

 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 153/376 (40%), Gaps = 81/376 (21%)

Query: 1   GDEIPEAMLPEPFNRSKQPAVESNTLETXXXXXXXXXXXXPVETGTLEKHQPA------A 54
           G +IPEA+LPEPFN+  Q  +  +                PV++    + QP       A
Sbjct: 141 GCDIPEAILPEPFNQRTQNIIPKSL---------------PVDSSI--ESQPTSEVELLA 183

Query: 55  VASHLSQSFKKRFSQKVAKSESENACIYSPMTCSRQSISPVLEETSLSEPSLITVSSELT 114
            + HL+ SF++ FS+K   +E+            +  +   L     S   ++T     +
Sbjct: 184 NSCHLNPSFRRHFSEKAVVAET-----------GKTQLLASLVPLLSSSSDIVTNKEIKS 232

Query: 115 DGNKDST--FCNSSIGEPMACLLATPCKDMDSINCRDSSAEEIASFQSTPAKLASTPAAL 172
           + +K+S+  +  S+I +P   L+           C  SS    A  +S   K       L
Sbjct: 233 EQHKESSELYSESTIIKPPVGLI-----------CPQSSVSSSAC-ESPYLKHPMVSDCL 280

Query: 173 KSATPALRPPKRCYMSPDEDSSSLADKLVR--RPPRARSLNFETPVKNVKNELNGMENVS 230
              TPA   PKR   S D    ++  ++      P  RSL+F          L G E+V 
Sbjct: 281 MVETPAQLTPKRSMPSCDNKLKTVTRQMGTSCHMPTKRSLDFSC--------LEGDESV- 331

Query: 231 ADNHXXXXXXXXILNILPESLLQSIREKERKVQEERDPAISLAKRRRQMVACLPKLFNVI 290
                        LN L E       E  + + +     +   + + Q+  CL  L  +I
Sbjct: 332 -------------LNTLDEP------ECHKVIHDTLSQTV---EAKGQVSTCLVDLVALI 369

Query: 291 HFLFQSINRSVITKEELIHKIIAGHSDIVDRRXXXXXXXXXXXXXXXWISEKSASSGDLL 350
           H +F S+    ITKEEL+HKII  + DI++RR               WI  K A  GDLL
Sbjct: 370 HRIFLSLGCFSITKEELVHKIIMNNCDIIERREIEEQIELLEKLIPEWIFRKLAPCGDLL 429

Query: 351 FCINKMSSAENIRSRL 366
           + I K S+ +++ +RL
Sbjct: 430 YSIRKESNLDSVCARL 445