Jatropha Genome Database

JcCB0070021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0070021.10 - phase: 1 /TE
         (585 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01004252001 assembled CDS                                       119   6e-27
GSVIVT01004123001 assembled CDS                                       106   4e-23
GSVIVT01037358001 assembled CDS                                        85   1e-16
GSVIVT01001301001 assembled CDS                                        76   6e-14
GSVIVT01004860001 assembled CDS                                        59   6e-09
GSVIVT01032339001 assembled CDS                                        58   1e-08
GSVIVT01003937001 assembled CDS                                        53   4e-07

>GSVIVT01004252001 assembled CDS
          Length = 533

 Score =  119 bits (297), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 159/351 (45%), Gaps = 21/351 (5%)

Query: 4   LKERMWKHINSWSNRFLSKAGREILIKSVIQALPAYCMSVFELPLCLCDELEKMMNSFWW 63
           ++ RM K +  W  ++LSK GR  LIKS + +LP Y +S F +P  +   LEK+   F W
Sbjct: 50  VEARMRKRLALWKRQYLSKGGRITLIKSTLASLPIYQLSFFRMPKLVVKRLEKLQRDFLW 109

Query: 64  GSKGSEKKLHWLAWNRMCGSKKDGGMGFRDLHCFNMAMLAKQGXRLLTSPNTLLYRVFKS 123
           G    E+K+H + W  +C  K+ GG+G R +   N A+L K   R     N    +V   
Sbjct: 110 GGGSMERKIHLINWEVVCTQKESGGLGIRKIDLLNKALLGKWIWRFAFEENFFWRKVVGV 169

Query: 124 KYFR---DRRLLDAQTGHHPSFVSRVIMSFNMVLKHGVRWRVGNGRRISVVKDPWLS--I 178
           KY +     R  +A+ G     V R I+  +      + ++VG G ++S   D W    +
Sbjct: 170 KYGQLGFGWRTKEAR-GTFGVGVWRDILKDSSWCWDNIEFKVGKGTKVSFWTDHWCGNEV 228

Query: 179 DGAFYVEDDSLFIDNTLLVKDLLVE--GERQWDVAKIINLFSLMDIHTILDIPLSVRDL- 235
               + +  +L +     V ++     G+  W++ ++   F+  ++  + ++   +RDL 
Sbjct: 229 LSQAFPQLFALAVQRNASVNEMWDSSLGQGGWNI-RLSRNFNDWELDALGELLHLLRDLR 287

Query: 236 ----EDELIWHYDKKGNFSIKSCYYLALRVLGRGDESIEGEGWGSIWKFNVAPKVRDFIW 291
               ED +IW  + +G F I+  Y L       G   I      SIW   V  KV  F W
Sbjct: 288 ISLEEDAVIWKEEGRGRFRIRDAYKLL-----SGSNVITFPK-KSIWVDKVPTKVAFFAW 341

Query: 292 RTLRNLLPTRWGLSRRGVNVDTTCPYCDLEED-INHALLLCTKVLEVWRVC 341
                 + T   L RRG  +   C  C  EE+ +NH LL CT V  +W + 
Sbjct: 342 EASWEKVLTLDKLQRRGWQLPNRCFLCGCEEENVNHILLHCTVVRALWEIV 392


>GSVIVT01004123001 assembled CDS
          Length = 386

 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 129/292 (44%), Gaps = 39/292 (13%)

Query: 25  REILIKSVIQALPAYCMSVFELPLCLCDELEKMMNSFWWGSKGSEKKLHWLAWNRMCGSK 84
           R  LI+S +  LP Y MS+  LP  +   LEK+   F WG    E+K H + W  +C SK
Sbjct: 74  RTTLIRSTLSNLPIYLMSLLCLPSVVRRRLEKIQRDFLWGGGNLERKPHLVRWEVVCLSK 133

Query: 85  KDGGMGFRDLHCFNMAMLAKQGXRLLTSPNTLLYRVFKSKYFRDR---RLLDAQTGHHPS 141
           K GG+G ++L   N A+LAK   R       L  +V + KY  +R      + +  H   
Sbjct: 134 KKGGLGVKNLSILNKALLAKWNWRFANEREALWNQVIRGKYGEERGGWSSREVREAHGLG 193

Query: 142 FVSRVIMSFNMVLKHGVRWRVGNGRRISVVKDPWLSIDGAFYVEDDSLF---IDNTLLVK 198
               + M++ +V    V + VGNGRR+   +D W   D    +   SLF   +D    V 
Sbjct: 194 LWKGIRMNWELVSNRLV-FIVGNGRRVRFWRDKWCG-DSPLCLSFPSLFALTVDKEESVA 251

Query: 199 DL---LVEGE------------RQWDVAKIINLFSLMDIHTILDIPLSVRDLEDELIWHY 243
           D+   L EG               W+V +  +    +    +++      D+ED + W  
Sbjct: 252 DVWDSLAEGGWGGWNPCFLRAFNDWEVEEASSFMERLHRSRVIE------DVEDRVSWTE 305

Query: 244 DKKGNFSIKSCYYLALRVLG--RGDESIEGEGWGSIWKFNVAPKVRDFIWRT 293
            K G FS+KS  YLA+ V G  R   S+       IW  NV PK+  F W  
Sbjct: 306 TKSGKFSVKS-LYLAIEVGGSARFPSSL-------IWNVNVQPKISFFAWEA 349


>GSVIVT01037358001 assembled CDS
          Length = 2456

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 145/351 (41%), Gaps = 32/351 (9%)

Query: 9    WKHINSWSNRFLSKAGREILIKSVIQALPAYCMSVFELPLCLCDELEKMMNSFWWGSKGS 68
            W  +  W   +LS  GR  LI+S +  +P Y +S+F++P  +  ++E++   F W     
Sbjct: 852  WIELYGWQKAYLSFGGRITLIQSCLTHMPCYFLSLFKIPTSVVAKIERLQRDFLWSGIEE 911

Query: 69   EKKLHWLAWNRMCGSKKDGGMGFRDLHCFNMAMLAKQGXRLLTSPNTLLYRVFKSKYFRD 128
             K+ H ++W+ +C  K  GG+GF  +   N+A+L K   R L   + L ++V  S Y   
Sbjct: 912  GKRNHLVSWDVVCNPKAKGGLGFGKISLRNLALLGKWLWRYLREGSALWHQVILSIYGSH 971

Query: 129  RRLLDAQT----GHH-P-SFVSRVIMSFNMVLKHGVRWRVGNGRRISVVKDPWLSID--G 180
                DA T     H  P   +++V   F+M      R+ VGNG RI + +D W      G
Sbjct: 972  SNGWDANTLVRWSHRCPWKAIAQVFQEFSMF----TRFVVGNGERILLWEDLWWGDQSLG 1027

Query: 181  AFYVEDDSLFIDNTLLVKDLLVEG---------ERQWDVAKIINLFSLMDIHTILDIPLS 231
            + Y     + +D  + +  +L             R    ++I +L  LM     L    S
Sbjct: 1028 SQYPRLFRVVMDKNIPISLILGSTHPFSWNFNFHRNLSDSEIEDLEGLMRSLDGLHQSPS 1087

Query: 232  VRDLEDELIWHYDKKGNFSIKSCYYLALRVLGRGDESIEGEGWGSIWKFNVAPKVRDFIW 291
            V +      W     G FSIKS +    R L +   S+       +W   V  KV+ F+W
Sbjct: 1088 VSNAR---FWPLSYSGLFSIKSFF----RALSQFSGSLPVFPSKFVWNSQVPFKVKSFVW 1140

Query: 292  RTLRNLLPTRWGLSRRGVNVDTTCPYCDL----EEDINHALLLCTKVLEVW 338
                  + T   L  R      +   C L     E  +H  L C   + +W
Sbjct: 1141 LVAHKKVNTNDMLQLRRPYKAPSPDICILCMKHGESADHLFLYCFLTMGLW 1191


>GSVIVT01001301001 assembled CDS
          Length = 325

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 66/126 (52%)

Query: 4   LKERMWKHINSWSNRFLSKAGREILIKSVIQALPAYCMSVFELPLCLCDELEKMMNSFWW 63
           ++ERM K    W ++++SK GR  LI S + ++P Y MS+  +P  +   LE++   F W
Sbjct: 164 VEERMRKKSARWKSQYISKGGRITLIWSTLASMPIYFMSMLSMPRKVRLRLERIQRDFLW 223

Query: 64  GSKGSEKKLHWLAWNRMCGSKKDGGMGFRDLHCFNMAMLAKQGXRLLTSPNTLLYRVFKS 123
           G    E+KLH + W+ +C  K +GG+G + L   N  +L K   R          +V + 
Sbjct: 224 GGGALERKLHLVRWDLVCLEKCNGGLGVKSLSILNKTLLCKWSWRFAIEREAFWNQVIRG 283

Query: 124 KYFRDR 129
           KY  ++
Sbjct: 284 KYGEEQ 289


>GSVIVT01004860001 assembled CDS
          Length = 1243

 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 14/138 (10%)

Query: 46  LPLCLCDELEKMMNSFWWGSKGSEKKLHWLAWNRMCGSKKDGGMGFRDLHCFNMAMLAKQ 105
           +P  +   LEK+   F W      KK H + W  +C  K+ GG+G R L C N A+L K 
Sbjct: 1   MPKSVARRLEKLQRDFLWEGANGGKKAHLVKWEVVCADKEKGGLGLRKLACLNKALLGKW 60

Query: 106 GXRLLTSPNTLLYRVFKSKYFRDR---RLLDAQTGHHPSFVSRVIMSF-----NMVLKHG 157
             R   +   +  +V ++KY ++    R   A           ++  F     NMV K  
Sbjct: 61  IWRFARAKEDIWKKVLEAKYGQEDFGWRTRKANGVFGVGVWKEILKEFAWCWENMVFK-- 118

Query: 158 VRWRVGNGRRISVVKDPW 175
               VG G +I    DPW
Sbjct: 119 ----VGKGNKIRFWIDPW 132


>GSVIVT01032339001 assembled CDS
          Length = 235

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 52/90 (57%)

Query: 15  WSNRFLSKAGREILIKSVIQALPAYCMSVFELPLCLCDELEKMMNSFWWGSKGSEKKLHW 74
           W  +++SK GR   IKS++ +LP Y +S+F++   +   LEK+  +F WG      K   
Sbjct: 2   WRRQYISKGGRLTPIKSMLSSLPIYFISLFQMSRRVRLRLEKIYRNFLWGGGMLGNKPQL 61

Query: 75  LAWNRMCGSKKDGGMGFRDLHCFNMAMLAK 104
           + W+ +C  K+ GG+  R L+  NMA++ K
Sbjct: 62  VKWDIVCLDKRKGGLRVRCLNSLNMALICK 91


>GSVIVT01003937001 assembled CDS
          Length = 354

 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 21/236 (8%)

Query: 39  YCMSVFELPLCLCDELEKMMNSFWWGSKGSEKKLHWLAWNRMCGSKKDGGMGFRDLHCFN 98
           Y +S+F++P  +  ++E++   F W   G  K+ + ++W+ +C  K   G+GF  +   N
Sbjct: 4   YFLSLFKIPALVAAKIERLQRDFLWSGVGEGKRDYLVSWDVVCKLKAKRGLGFGKIVLRN 63

Query: 99  MAMLAKQGXRLLTSPNTLLYRVFKSKYFRDRRLLDAQTG----HHPSF--VSRVIMSFNM 152
           +A+L K   R     + L ++V  S Y       DA T     H   +  +++V   F+ 
Sbjct: 64  VALLGKWLWRYPRKGSALWHQVILSIYGSHSNGWDANTIVKWLHRCPWKAIAQVFQEFSK 123

Query: 153 VLKHGVRWRVGNGRRISVVKDPWLSIDGAFYVEDDSLF---IDNTLLVKDLLVEGER-QW 208
                 R+ VG+  RI   +D W   D     +   LF    D  +L+  +L       W
Sbjct: 124 F----TRFVVGDEERIRFWEDLWWG-DQPLESQYPRLFRVVTDKNILISSILGSTRPLSW 178

Query: 209 DVAKIINL--FSLMDIHTI---LDIPLSVRDLEDELIWHYDKKGNFSIKSCYYLAL 259
           +     NL  F + D+  +   LD       + D   W+    G F++KS ++LAL
Sbjct: 179 NFNFRSNLSDFEIEDLEGLMRSLDCLHLSSSVSDARSWYLSSSGLFTVKS-FFLAL 233