Jatropha Genome Database

JcCB0069321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0069321.10 + phase: 2 /pseudo/partial
         (496 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016575001 assembled CDS                                       828   0.0  
GSVIVT01020924001 assembled CDS                                       155   5e-38
GSVIVT01038361001 assembled CDS                                       153   1e-37
GSVIVT01021990001 assembled CDS                                        60   2e-09

>GSVIVT01016575001 assembled CDS
          Length = 611

 Score =  828 bits (2140), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/479 (83%), Positives = 435/479 (90%), Gaps = 3/479 (0%)

Query: 4   TNTHVQTRISFPPNLFLSSSKSR-KAAFCTYSISNDNRKNDEAGTAETFVLTTPLYYVNA 62
           T+ H++TR+ FP  LF S S S  +A FC  S   DN K  E   +++FVLTTPLYYVNA
Sbjct: 24  TSRHLKTRLHFPRPLFSSPSFSSGRALFC--SCRADNFKGSEREVSDSFVLTTPLYYVNA 81

Query: 63  PPHMGSAYTTIAADAIARFQRLLGKKVIFVTGTDEHGEKIXXXXXXXXXSPSEHCDVISQ 122
           PPHMGSAYTTIAADAIARFQRL GKKVIF+TGTDEHGEKI         SPSEHCDVISQ
Sbjct: 82  PPHMGSAYTTIAADAIARFQRLSGKKVIFITGTDEHGEKIATAAAACGSSPSEHCDVISQ 141

Query: 123 AYKTLWKDLEIAYDKFIRTTDPKHEAIVKEFYSRVLANGDIYRADYEGLYCVNCEEYKDE 182
           AYKTLW+DL+IAYDKFIRTT+PKHEAIVKEFYSRVLANGDIYRADYEGLYC+NCEEYKDE
Sbjct: 142 AYKTLWQDLDIAYDKFIRTTNPKHEAIVKEFYSRVLANGDIYRADYEGLYCINCEEYKDE 201

Query: 183 KDLLDNKCCPVHLKPCIQRKEDNYFFALSKYQKLLEETLTECPNFVQPSFRLNEVQSWIR 242
           K+LL+N CCP+HLKPC+ RKEDNYFFALSKYQKLLEETLT+ P+FVQPSFRLNEVQSWI+
Sbjct: 202 KELLENNCCPMHLKPCVLRKEDNYFFALSKYQKLLEETLTQNPDFVQPSFRLNEVQSWIK 261

Query: 243 SGLKDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDNKQPNLQSAVSSGWPA 302
           SGL+DFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDN+QP+LQSAVSSGWPA
Sbjct: 262 SGLRDFSISRASVDWGIPVPNDNKQTIYVWFDALLGYISALSEDNEQPDLQSAVSSGWPA 321

Query: 303 SLHLIGKDILRFHAVYWPAMLMSAGLGLPKMVFGHGFLTKDGLKMGKSLGNTLEPNELIE 362
           SLHLIGKDILRFHAVYWPAML+SAGL LPKMVFGHGFLTKDG+KMGKSLGNTLEPN+L++
Sbjct: 322 SLHLIGKDILRFHAVYWPAMLLSAGLSLPKMVFGHGFLTKDGMKMGKSLGNTLEPNDLVQ 381

Query: 363 KFGPDAVRYFFLREVEFGSDGDYSEERFVNIVNAHLANTIGNLLNRTLGLLKKNCQSTLV 422
           +FG DAVRYFFLREVEFG+DGDYSE+RF+NIVNAHLANTIGNLLNRTLGLLKKNCQSTL 
Sbjct: 382 RFGSDAVRYFFLREVEFGNDGDYSEDRFINIVNAHLANTIGNLLNRTLGLLKKNCQSTLA 441

Query: 423 VDAAIAAEGNAFKDNVEKLVEKARIHYENLSLSLACEAVLEIGNAGNGYMDERTPWSLF 481
           VD+ +AAEGNAFKD V+KLVEKA+  YENLSLS ACEAVLEIGNAGN Y+DER PWSLF
Sbjct: 442 VDSTLAAEGNAFKDTVDKLVEKAKFQYENLSLSSACEAVLEIGNAGNLYIDERAPWSLF 500


>GSVIVT01020924001 assembled CDS
          Length = 949

 Score =  155 bits (391), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 131/495 (26%), Positives = 218/495 (44%), Gaps = 73/495 (14%)

Query: 51  FVLTTPLYYVNAPPHMGSAY-TTIAADAIARFQRLLGKKVIFVTGTDEHGEKIXXXXXXX 109
            ++T+ L YVN  PH+G+     ++AD  AR+ RL G   I++ GTDE+G          
Sbjct: 25  ILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEE 84

Query: 110 XXSPSEHCDVISQAYKTLWKDLEIAYDKFIRTTDPKHEAIVKEFYSRVLANGDIYRADYE 169
             +P + CD     +K ++K   I++D+F RT+ P+   + +  + +++ N  +     +
Sbjct: 85  KCTPQQICDKYHAIHKEVYKWFNISFDEFGRTSSPQQTEVCQAIFKKLMENNWLSENVMQ 144

Query: 170 GLYCVNCEEYKDEK-------------------------------DLLDNKCCPVHLKPC 198
            LYC  C+++  ++                               +L D +C   H  P 
Sbjct: 145 QLYCDKCQKFLADRLVEGICPTQDCNYDSARGDQCEKCGKLLNPIELKDPRCKFCHSTPH 204

Query: 199 IQRKEDNYFFALSKYQKLLEETLTECPNF--VQPSFRLNEVQS---WIRSGLKDFSISRA 253
           I R  ++ F  L     LL++ L E  N   V  S+  N +Q+   W++ GLK   I+R 
Sbjct: 205 I-RDTNHLFLELP----LLKDKLEEYINLMSVAGSWSQNAIQATHAWLKEGLKPRCITR- 258

Query: 254 SVDWGIPVPNDN--KQTIYVWFDALLGYISALSEDNKQPNLQSAVSSGW------PASLH 305
            + WG+PVP++    +  YVWFDA +GY+S          + S  +  W      P ++ 
Sbjct: 259 DLKWGVPVPHEKFKDKVFYVWFDAPIGYVS----------ITSCYTPDWEKWWKNPENVE 308

Query: 306 L---IGKDILRFHAVYWPAMLM--SAGLGLPKMVFGHGFLTKDGLKMGKSLGNTLEPNEL 360
           L   +GKD + FH V +P+ L+  S    L K +    +L  +  K  KS G  +  N+ 
Sbjct: 309 LYQFMGKDNVPFHTVMFPSTLLGTSENWTLMKTISVTEYLNYEAGKFSKSKGVGVFGNDA 368

Query: 361 IEKFGPDAV-RYFFLREVEFGSDGDYSEERFVNIVNAHLANTIGNLLNRTLGLLKKNC-- 417
            +   P  V RY+ L      SD  ++       +N+ L N +GN +NR L  + K    
Sbjct: 369 KDTNIPVEVWRYYLLTNRPEVSDTLFTWVDLQAKLNSELLNNLGNFINRVLSFIAKPAGL 428

Query: 418 -QSTLVVDAAIAAEGNAFKDNVEKL---VEKARIHYENLSLSLACEAVLEIGNAGNGYMD 473
              +++ DA  A      K   EK+   VE+     E + L    +  + I + GN Y+ 
Sbjct: 429 GYGSVIPDAPGAELHQLTKTLAEKVGRFVEQYVEAMEKVKLKQGLKTAMSISSEGNAYLQ 488

Query: 474 ERTPWSLFXERGVGC 488
           E   W L+ E    C
Sbjct: 489 ESQFWKLYKEDQPSC 503


>GSVIVT01038361001 assembled CDS
          Length = 804

 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 127/504 (25%), Positives = 216/504 (42%), Gaps = 69/504 (13%)

Query: 40  RKNDEAGTAETFVLTTPLYYVNAPPHMGSAY-TTIAADAIARFQRLLGKKVIFVTGTDEH 98
           RK          ++T+ L YVN  PH+G+     ++AD  AR+ RL G  V+++ GTDE+
Sbjct: 10  RKKVPVEGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNVLYICGTDEY 69

Query: 99  GEKIXXXXXXXXXSPSEHCDVISQAYKTLWKDLEIAYDKFIRTTDPKHEAIVKEFYSRVL 158
           G            SP + CD   + +K ++    I++D+F RT+ P+H  + +  + +++
Sbjct: 70  GTATETKAMEENCSPQQICDKYHKIHKEVYDWFGISFDEFGRTSTPQHTEVCQAIFKKLM 129

Query: 159 ANGDIYRADYEGLYCVNCEEYKDEK-------------------------------DLLD 187
            N  +     + LYC  C+ +  ++                               +L D
Sbjct: 130 ENNWLSENRMQQLYCETCQRFLADRLVEGTCPTLDCNYDSARGDQCEKCGKLLNPTELKD 189

Query: 188 NKCCPVHLKPCIQRKEDNYFFALSKYQKLLEETLTECPNFVQPSFRLNEVQS---WIRSG 244
            +C      P I R  D+ F  L   +  LEE +      +   +  N +Q+   W++ G
Sbjct: 190 PRCKVCQSSPQI-RDTDHLFLELPLLKDKLEEYINNMS--IAGCWSQNAIQATYAWLKEG 246

Query: 245 LKDFSISRASVDWGIPVPNDN--KQTIYVWFDALLGYISALSEDNKQPNLQSAVSSGW-- 300
           L+   I+R  + WG+PVP++    +  YVWFDA +GY+S          + +  +  W  
Sbjct: 247 LRSRCITR-DLKWGVPVPHEKYKDKVFYVWFDAPIGYVS----------ITACYTPEWEK 295

Query: 301 ----PASLHL---IGKDILRFHAVYWPAMLMSAG--LGLPKMVFGHGFLTKDGLKMGKSL 351
               P ++ L   +GKD + FH V +P+ L+  G    L K +    +L  +  K  KS 
Sbjct: 296 WWKNPENVDLYQFMGKDNVPFHTVMFPSTLIGTGENWTLMKSISVTEYLNYEAGKFSKSK 355

Query: 352 GNTLEPNELIEKFGPDAV-RYFFLREVEFGSDGDYSEERFVNIVNAHLANTIGNLLNRTL 410
           G  +  N++ +   P  V RY+ L      SD  ++       +N  L N +GN +NR L
Sbjct: 356 GVGVFGNDVKDTKIPAEVWRYYLLTNRPEVSDSLFTWVDLQAKLNTELLNNLGNFINRVL 415

Query: 411 GLLKKN---CQSTLVVDAAIAAE---GNAFKDNVEKLVEKARIHYENLSLSLACEAVLEI 464
             + K       + + DA  A       A  + V   +E+     E + L    +  + I
Sbjct: 416 SFIAKAPGLGYGSSIPDAPGAESHYLTKALAEKVGAYLEQYIEAMEKVKLKQGLKIGMSI 475

Query: 465 GNAGNGYMDERTPWSLFXERGVGC 488
            + GNGY+ E   W L+ E    C
Sbjct: 476 SSEGNGYLQESQFWKLYKEDRASC 499


>GSVIVT01021990001 assembled CDS
          Length = 217

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 12/164 (7%)

Query: 170 GLYCVNCEEYKDEKDLLDNKCCPVHLKPCIQRKEDNYFFALSKYQKLLEETLTECPNFVQ 229
           G  C  C +  +  +L D +C      P I R  D+ F  L   +  LEE +      + 
Sbjct: 33  GDQCEKCGKLLNPTELKDLRCKVCQSTPQI-RDTDHLFRELPLLKDKLEEYINNMS--IA 89

Query: 230 PSFRLNEVQS---WIRSGLKDFSISRASVDWGIPVPNDN--KQTIYVWFDALLGYISALS 284
             +  N +Q+   WI+ G++   I+R  + WG+PVP++    +  YVWFDA +GY+S  +
Sbjct: 90  GCWSQNAIQATYAWIKEGVRSRCITR-DLKWGVPVPHEKYKDKVFYVWFDAPIGYVSITA 148

Query: 285 EDNKQPNLQSAVSSGWPASLH-LIGKDILRFHAVYWPAMLMSAG 327
                P  +    +     L+  +GKD + FH V +P+ L+  G
Sbjct: 149 --CYTPEWEKWWKNPENVDLYQFMGKDNVSFHTVMFPSTLIGTG 190