Jatropha Genome Database

JcCB0069051.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0069051.10 - phase: 0 
         (114 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030190001 assembled CDS                                        74   1e-14
GSVIVT01021772001 assembled CDS                                        70   3e-13
GSVIVT01024563001 assembled CDS                                        68   7e-13
GSVIVT01032682001 assembled CDS                                        59   6e-10
GSVIVT01006001001 assembled CDS                                        54   2e-08
GSVIVT01010603001 assembled CDS                                        51   1e-07
GSVIVT01027088001 assembled CDS                                        49   5e-07

>GSVIVT01030190001 assembled CDS
          Length = 139

 Score = 73.9 bits (180), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 20  MPGEAVDCGQVNSALASCIPFLTGADTAPSAACCGGVKNLKALAPTTADRRAACDCVKAA 79
           M  E + CG V + LA CI +L  A   P  ACC GVKNLK  A TT DRR AC C+  A
Sbjct: 44  MAVEGLSCGDVATQLAPCINYLRSAGPLP-PACCNGVKNLKNSAATTQDRRTACKCLINA 102

Query: 80  ASHYPNINEDSASSLPKKCAVEVNIPISKNTNCQK 114
           +     +N   A+ LP KC V +   IS +TNC +
Sbjct: 103 SKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQ 137


>GSVIVT01021772001 assembled CDS
          Length = 129

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 49/92 (53%)

Query: 22  GEAVDCGQVNSALASCIPFLTGADTAPSAACCGGVKNLKALAPTTADRRAACDCVKAAAS 81
           G  V CG V+   A+C+ + TG    PS ACC G++ L A   T  D++  C C+K    
Sbjct: 23  GATVPCGTVDMKAAACVGYATGKQPKPSPACCSGLQQLAATVKTVDDKKNICRCLKNGVK 82

Query: 82  HYPNINEDSASSLPKKCAVEVNIPISKNTNCQ 113
            +  + +   S +P  C ++V  P+S NTNC+
Sbjct: 83  AFAGVQDRLLSQIPTACNIKVGFPVSLNTNCE 114


>GSVIVT01024563001 assembled CDS
          Length = 119

 Score = 68.2 bits (165), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 25  VDCGQVNSALASCIPFLTGADTAPSAACCGGVKNLKALAPTTADRRAACDCVKAAASHYP 84
           V C QV   L  C+ +L      PS+ CC GVK +KA + T  DRR AC C++  A+  P
Sbjct: 29  VTCSQVTQLLNPCVNYLIYGGAIPSS-CCAGVKQVKAASKTGEDRRTACSCIQDGAAMIP 87

Query: 85  NINEDSASSLPKKCAVEVNIPISKNTNCQK 114
            I+ +  +SLP +C V +   IS +T+C +
Sbjct: 88  GIDYNLVASLPSQCGVSLPYKISPSTDCSR 117


>GSVIVT01032682001 assembled CDS
          Length = 144

 Score = 58.5 bits (140), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 29  QVNSALASCIPFLTGADTAPSAACCGGVKNLKALAPTTADRRAACDCVKAAAS-HYPNIN 87
            +N  L  C  FL G    P  ACC GVK L A   T  DR+ AC C+KA+ + H P   
Sbjct: 56  HINRKLTPCRSFLLGQQNKPPPACCTGVKGLNAEYKTATDRQRACSCLKASFTKHQPAFR 115

Query: 88  EDSASSLPKKCAVEVNIPISKNTNCQK 114
              A  LP +C   +   I  N +C +
Sbjct: 116 LSFAQRLPGECNANIRNTIIANFDCSR 142


>GSVIVT01006001001 assembled CDS
          Length = 69

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 48  PSAACCGGVKNLKALAPTTADRRAACDCVKAAASHYPNINEDSASSLPKKCAVEVNIPIS 107
           P AACC G  NL + A T+AD++AAC+C+K AA    N N   A  LP  C + +   +S
Sbjct: 2   PPAACCTGASNLASSASTSADKKAACECIKTAAKKL-NPNPQLAKGLPGNCKISLPFTVS 60

Query: 108 KNTNCQK 114
            N +C K
Sbjct: 61  ANVDCSK 67


>GSVIVT01010603001 assembled CDS
          Length = 102

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 24  AVDCGQVNSALASCIPFLT-GA-DTAPSAACCGGVKNLKALAPTTADRRAACDCVKAAAS 81
           A+DC  V + +++C  F+T GA D  P + CC  V  L ++A +  +RR+ C C+    +
Sbjct: 3   AIDCSTVTALVSACSTFITYGAPDPIPGSPCCDAVVGLNSIADSIDNRRSVCRCLMGLIA 62

Query: 82  HYPNINEDSASSLPKKCAVEVNIPISKNTNCQ 113
            Y N N  + ++LP  C + +   +  NT+C 
Sbjct: 63  TY-NPNATAIATLPGFCGISLGFNLDPNTDCN 93


>GSVIVT01027088001 assembled CDS
          Length = 115

 Score = 48.9 bits (115), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 27  CGQVNSALASCIPFLTGADTA-PSAACCGGVKNLKALAPTTADRRAACDCVKAAASHYPN 85
           C +V   +A C+ F      A PS  CC GV  +  +A T  DR A C+C+K    +Y +
Sbjct: 24  CPRVIREVAPCLSFFQDDGPAKPSKRCCEGVTEVNGMAKTKKDRVAICECLKQTL-NYID 82

Query: 86  INEDSASSLPKKCAVEVNI-PISKNTNCQK 114
            +      L K+C + +++ P  +NTNC +
Sbjct: 83  YDPKRIPLLGKQCGLTIDLPPTGQNTNCSQ 112