Jatropha Genome Database

JcCB0068571.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0068571.20 - phase: 0 
         (79 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032993001 assembled CDS                                       118   6e-28
GSVIVT01004944001 assembled CDS                                       107   9e-25

>GSVIVT01032993001 assembled CDS
          Length = 138

 Score =  118 bits (295), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 58/80 (72%), Positives = 65/80 (81%), Gaps = 1/80 (1%)

Query: 1   MNSVFPAEACETIGGEACLADIYPEVKLEREARNEAG-IASEPIEREYLDYNDAKTVFVG 59
           M SVFPAEAC+ IGGEACLAD YPEV+L++EARN A   ASE  ER+Y +YNDAKTVF  
Sbjct: 59  MTSVFPAEACDVIGGEACLADCYPEVRLKQEARNRAARTASEVTERDYYEYNDAKTVFRA 118

Query: 60  EACDDLGGEFCGFEYQKGVY 79
           EACDDLGG FC  EYQ+GVY
Sbjct: 119 EACDDLGGLFCEREYQRGVY 138


>GSVIVT01004944001 assembled CDS
          Length = 139

 Score =  107 bits (268), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 54/80 (67%), Positives = 64/80 (80%), Gaps = 1/80 (1%)

Query: 1   MNSVFPAEACETIGGEACLADIYPEVKLEREARNE-AGIASEPIEREYLDYNDAKTVFVG 59
             SVFPAEACE +GGEAC A++YPEVKL+ EA N  A  A+E ++REYL+YN  KTVF G
Sbjct: 57  TTSVFPAEACEVVGGEACDAEMYPEVKLKAEAGNPPARSATEGVDREYLEYNSPKTVFPG 116

Query: 60  EACDDLGGEFCGFEYQKGVY 79
           EACDDLGGEFC  EYQ+GV+
Sbjct: 117 EACDDLGGEFCEPEYQEGVF 136