Jatropha Genome Database

JcCB0068361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0068361.10 + phase: 0 /partial
         (135 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020922001 assembled CDS                                       156   2e-39

>GSVIVT01020922001 assembled CDS
          Length = 229

 Score =  156 bits (395), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 74/105 (70%), Positives = 85/105 (80%)

Query: 31  EFYNTISNIPCXXXXXXXXXXXXRQQFEKRFSVLHISNMILAIGSMFFHATLQRVQQQSD 90
           +F NT+SN+P             RQ FEKRFSVLHISN+ILAIGS+  H++LQR+QQQSD
Sbjct: 6   KFLNTVSNVPGIVLGLFGLINALRQGFEKRFSVLHISNIILAIGSILHHSSLQRLQQQSD 65

Query: 91  ETPMVWEMLLYLYILYSPDWHYHSTMPTFLFLYGAVFAMVHSVVH 135
           ETPMVWEMLLY+YIL+SPDWHY STMPTFLFLYGA FA+VHS VH
Sbjct: 66  ETPMVWEMLLYIYILHSPDWHYQSTMPTFLFLYGAAFAIVHSQVH 110