Jatropha Genome Database

JcCB0067191.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0067191.20 - phase: 0 /pseudo/partial
         (323 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008686001 assembled CDS                                       367   e-102
GSVIVT01011397001 assembled CDS                                       119   2e-27
GSVIVT01020760001 assembled CDS                                       105   4e-23
GSVIVT01035393001 assembled CDS                                        97   1e-20
GSVIVT01024927001 assembled CDS                                        89   3e-18
GSVIVT01028703001 assembled CDS                                        86   3e-17
GSVIVT01036763001 assembled CDS                                        67   9e-12
GSVIVT01034150001 assembled CDS                                        59   4e-09
GSVIVT01024791001 assembled CDS                                        55   3e-08
GSVIVT01019239001 assembled CDS                                        55   6e-08
GSVIVT01021791001 assembled CDS                                        51   6e-07

>GSVIVT01008686001 assembled CDS
          Length = 538

 Score =  367 bits (941), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 176/183 (96%), Positives = 182/183 (99%)

Query: 141 IMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIF 200
           +MPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIF
Sbjct: 356 LMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIF 415

Query: 201 GQDNVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMA 260
           G+DNVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMA
Sbjct: 416 GEDNVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMA 475

Query: 261 TADVVDAEVRELVERAYARAKHIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAEL 320
           TAD+VDAEVRELVE+AY+RAK I+TTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAEL
Sbjct: 476 TADIVDAEVRELVEKAYSRAKQIMTTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAEL 535

Query: 321 FVA 323
           FVA
Sbjct: 536 FVA 538


>GSVIVT01011397001 assembled CDS
          Length = 657

 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 105/178 (58%), Gaps = 25/178 (14%)

Query: 141 IMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIF 200
           + P +DPV K+++IPRGQA GLT+F P E+     L S+  L  ++   LGGR AEE+IF
Sbjct: 485 LTPGHDPVQKVTLIPRGQARGLTWFIPGEDPT---LISKQQLFARIVGGLGGRAAEELIF 541

Query: 201 GQDNVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMA 260
           G+  +TTGA+ D  QV+++ARQMV  FG S +IG  A+  P          + Q D    
Sbjct: 542 GESEITTGAAGDLQQVTQIARQMVTMFGMS-EIGPWALTDP----------AVQSD---- 586

Query: 261 TADVVDAEVRELVERAYARAKHIITTHIDILHKLAQLLIEKETVDGEEF---MSLFID 315
               +D  VR ++E AY  AK  I  + + + KL ++L+EKET+ G+EF   +S F D
Sbjct: 587 ----IDTSVRNIIESAYEVAKTHIRNNREAIDKLVEVLLEKETLTGDEFRAILSEFTD 640


>GSVIVT01020760001 assembled CDS
          Length = 333

 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 106/182 (58%), Gaps = 6/182 (3%)

Query: 141 IMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIF 200
           + P +D V K+++IPRGQA GLT+F PS++     L S+  L  ++   LGGR AEEVIF
Sbjct: 142 LTPGHDAVQKVTLIPRGQARGLTWFIPSDDPT---LISKQQLFARIVGGLGGRAAEEVIF 198

Query: 201 GQDNVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMA 260
           G+  VTTGA+ D  Q++ +A+QMV  FG S       +     +  +  +M ++   S  
Sbjct: 199 GEPEVTTGAAGDLQQITGLAKQMVTTFGMSDIGPWSLMDTSAQSADVIMRMMARNSMSEK 258

Query: 261 TADVVDAEVRELVERAYARAKHIITTHIDILHKLAQLLIEKETVDGEEF---MSLFIDGK 317
            A+ +D  V+ + + AY  A   I  + + + K+ ++L+EKET+ G+EF   +S F++  
Sbjct: 259 LAEDIDTAVKRISDDAYEIALTHIRNNREAIDKIVEVLLEKETMTGDEFRAILSEFVEIP 318

Query: 318 AE 319
           AE
Sbjct: 319 AE 320


>GSVIVT01035393001 assembled CDS
          Length = 1053

 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 10/135 (7%)

Query: 178 SRSYLENQMAVALGGRVAEEVIFGQDNVTTGASNDFMQVSRVARQMVERFGFSKKIGQVA 237
           SR  +  ++ V +GGRVAEE+IFG+  VT+GAS+D  Q + +AR MV +FG SK++G V 
Sbjct: 549 SRKQMLARLDVCMGGRVAEELIFGESEVTSGASSDLQQATSLARAMVTKFGMSKEVGVVT 608

Query: 238 IGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVERAYARAKHIITTHIDILHKLAQL 297
                     G+ MS++      T  +++ EV+  +E+AY  AK I+TTH   LH LA  
Sbjct: 609 HNYDDN----GKSMSTE------TRLLIEKEVKHFLEKAYNNAKTILTTHSKELHALANA 658

Query: 298 LIEKETVDGEEFMSL 312
           L+E ET+ G +  +L
Sbjct: 659 LLEHETLTGNQIKAL 673


>GSVIVT01024927001 assembled CDS
          Length = 820

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 13/160 (8%)

Query: 146 DPVAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQDN 204
           +P+ K++I+PRG A  G   + P+E  L     ++  L +   + LGGR AE+V+ G+  
Sbjct: 612 EPLLKVTIVPRGTAALGFAQYVPNENLL----MTKEQLFDMTCMTLGGRAAEQVLIGR-- 665

Query: 205 VTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADV 264
           ++TGA ND  +V+++    V  +GFS K+G ++       P         K YS  T  +
Sbjct: 666 ISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSF------PQREDGFEMTKPYSSKTGAI 719

Query: 265 VDAEVRELVERAYARAKHIITTHIDILHKLAQLLIEKETV 304
           +D EVRE V +AY R   +I  H + + ++A+LL+EKE +
Sbjct: 720 IDTEVREWVGKAYERTLQLIEEHKEQVAQIAELLLEKEVL 759


>GSVIVT01028703001 assembled CDS
          Length = 1311

 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/168 (37%), Positives = 92/168 (54%), Gaps = 18/168 (10%)

Query: 147  PVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQDNVT 206
            P+ K +I+PRG A G+    PS +       S+  L  ++ V +GGRVAEE+IFGQD+VT
Sbjct: 1139 PIHKATIMPRGSALGMVTQLPSNDET---TISKKQLLARLDVCMGGRVAEELIFGQDHVT 1195

Query: 207  TGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDYSMATADVVD 266
            TGAS+D    + +A+ MV   G S  IG + I      P  G +M S+          +D
Sbjct: 1196 TGASSDLNTATELAQYMVSTCGMSDTIGPIYI---KDRP--GVEMESR----------ID 1240

Query: 267  AEVRELVERAYARAKHIITTHIDILHKLAQLLIEKETVDGEEFMSLFI 314
            AEV +L+  AY R K ++  H   LH LA  L+E ET++ E+   + +
Sbjct: 1241 AEVVKLLREAYDRVKALLKKHEKALHALANALLECETLNAEDIKRILL 1288


>GSVIVT01036763001 assembled CDS
          Length = 1014

 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 7/144 (4%)

Query: 141 IMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIF 200
           + P +D  A   ++P G+   ++ F P E+ L+ G  +  Y++ QM VA GGR AE V+F
Sbjct: 785 LFPRFDWHAFSQLLPGGKETAISVFYPREDMLDQGYTTFGYMKMQMVVAHGGRCAERVVF 844

Query: 201 GQDNVTTGASNDFMQVSRVARQMV-----ERFGFSKKIGQVAIGGPGGNPFLGQQMSSQK 255
           G D +T G  +D  +++++AR+MV      R G +    +V +     +P  G+ +  + 
Sbjct: 845 G-DEITDGGRDDLEKITKIAREMVISPANSRLGLTALTKRVGLMDRPDSP-DGELIKYRW 902

Query: 256 DYSMATADVVDAEVRELVERAYAR 279
           D        +  EV EL  R   R
Sbjct: 903 DDPFVIPANMTLEVSELFSRELTR 926


>GSVIVT01034150001 assembled CDS
          Length = 271

 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 8/104 (7%)

Query: 198 VIFGQDNVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQKDY 257
           V+ G+  ++TGA ND  +V+++    V  +GFS+K+G ++       P         K Y
Sbjct: 101 VLLGK--ISTGAQNDLEKVTKMIYAQVAVYGFSEKVGLLSF------PQRDDAFEMTKPY 152

Query: 258 SMATADVVDAEVRELVERAYARAKHIITTHIDILHKLAQLLIEK 301
           S  T+ V+D EVRE V +AY R   +I  H + +  +A+L +EK
Sbjct: 153 SSKTSAVIDNEVREWVAKAYDRTVKLIEEHKEPVAMIAELSLEK 196


>GSVIVT01024791001 assembled CDS
          Length = 552

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 81/165 (49%), Gaps = 10/165 (6%)

Query: 137 NXLPIMPEYDPVAKISIIPR-GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVA 195
           N LP  P    V K+SI+PR G A G T+  P+ E  +  L     L  ++   LGGR A
Sbjct: 352 NLLPGQPR---VEKLSILPRSGGALGFTYTPPTNE--DRYLLFIDELRGRLVTLLGGRAA 406

Query: 196 EEVIFGQDNVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIG--GPGGNPFLGQQMSS 253
           EEV++    V+TGA +D  + + +A + V  +G ++ IG V++     GG    G  M  
Sbjct: 407 EEVVY-SGRVSTGALDDIRRATDMAYKAVAEYGLNQTIGPVSLATLSGGGIDESGGSMPW 465

Query: 254 QKDYSMATADVVDAEVRELVERAYARAKHIITTHIDILHKLAQLL 298
            +D      D+V  EV+ L++ A   A  ++  +  +L  L   L
Sbjct: 466 GRDQGH-LVDLVQREVKLLLQSALDVALSVVRANPTVLEGLGAHL 509


>GSVIVT01019239001 assembled CDS
          Length = 907

 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 83/178 (46%), Gaps = 27/178 (15%)

Query: 150 KISIIPRGQAGGLTFFAPSEERLESGLY---SRSYLENQMAVALGGRVAEEVIFGQDNVT 206
           +IS+IPRGQ      F    +RL+   Y    R  L +++ V LGGR AEEVI+G+D  T
Sbjct: 689 RISVIPRGQTLSQVVF----DRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGRD--T 742

Query: 207 TGASNDFM-QVSRVARQMVERFGFSKKIGQVAIGGPGG--------NPFLGQQMSSQKDY 257
           + AS D++   S +AR+++  +     +  V  G P           P L  + S   DY
Sbjct: 743 SRASVDYLADASWLARKILTIWNLENPM--VIHGEPPPWRKKVKFVGPRLDFEGSLYDDY 800

Query: 258 SMATA-------DVVDAEVRELVERAYARAKHIITTHIDILHKLAQLLIEKETVDGEE 308
            +          D V     EL+   Y +   ++  H   L K  ++L+E++ + GEE
Sbjct: 801 GLIEPPVNFNLDDQVAQRTEELISDMYGKTLTLLRRHHAALLKTVKVLVEQKEISGEE 858


>GSVIVT01021791001 assembled CDS
          Length = 1320

 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 86/175 (49%), Gaps = 19/175 (10%)

Query: 141  IMPEYDPVAKISIIPRGQAG-GLTFF--APSEERLESGLYSRSYLENQMAVALGGRVAEE 197
            ++P +D V  + + P    G G T    A +E  +   + +RSY+E ++    G  VA +
Sbjct: 1110 LLPNFDVVDNLWLEPLSWQGIGCTKITKAKNEGSMHGNVETRSYIEKRLVFCFGSYVASQ 1169

Query: 198  VI--FGQDNVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMSSQK 255
            ++  FG++N+ +  S++  Q   +A +MV + G+          GP  +P +    ++  
Sbjct: 1170 LLLPFGEENILS--SSELKQAQEIATRMVIQHGW----------GPDDSPAVYYYSNAVS 1217

Query: 256  DYSMATADV--VDAEVRELVERAYARAKHIITTHIDILHKLAQLLIEKETVDGEE 308
              SM       V A++ ++   AY RAK ++  +  +L K+ + L+E E + G++
Sbjct: 1218 ALSMGNNHEYEVAAKIEKMYYLAYDRAKEMLQKNRRVLEKVVEELLEFEILTGKD 1272