Jatropha Genome Database
- JcCB0067191.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0067191.10 + phase: 0 /pseudo/partial
(233 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01008685001 assembled CDS 189 7e-49
GSVIVT01023930001 assembled CDS 186 1e-47
GSVIVT01024833001 assembled CDS 116 1e-26
GSVIVT01034043001 assembled CDS 110 5e-25
GSVIVT01019759001 assembled CDS 107 4e-24
GSVIVT01026892001 assembled CDS 103 7e-23
GSVIVT01013173001 assembled CDS 98 3e-21
>GSVIVT01008685001 assembled CDS
Length = 508
Score = 189 bits (481), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 97/145 (66%), Positives = 109/145 (75%), Gaps = 18/145 (12%)
Query: 89 EWISQLSIRSWS*RTTRMMKEQMSYHSKSGPNK*EICGGKKAWRRSIS*QRVKTAIECIS 148
E ++LS + W T+ M++ + + G A+R + KTAI+C S
Sbjct: 382 EGTNELSFQEW----TQQMRDMLEARKR----------GDLAFRD----KDFKTAIDCYS 423
Query: 149 QFIDVGTMVSPTVYARRSLCYLLCDQPDAALRDAMQAQCVYPEWSTAFYMQAVALAKLDM 208
QFIDVGTMVSPTVYARRSLCYLLCDQPD ALRDAMQAQCVYP+WSTAFYMQAVALAKLDM
Sbjct: 424 QFIDVGTMVSPTVYARRSLCYLLCDQPDTALRDAMQAQCVYPDWSTAFYMQAVALAKLDM 483
Query: 209 HKDATDMLNEAAALEEKRQRGGRGS 233
HKDA DMLNEAAALEEKRQRGGRGS
Sbjct: 484 HKDAADMLNEAAALEEKRQRGGRGS 508
>GSVIVT01023930001 assembled CDS
Length = 500
Score = 186 bits (471), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 93/145 (64%), Positives = 108/145 (74%), Gaps = 18/145 (12%)
Query: 89 EWISQLSIRSWS*RTTRMMKEQMSYHSKSGPNK*EICGGKKAWRRSIS*QRVKTAIECIS 148
E ++LS + W T+ M++ + + G A+R + KTAI+C S
Sbjct: 374 EGTNELSFQEW----TQQMRDMLEARKR----------GDFAFRD----KDFKTAIDCYS 415
Query: 149 QFIDVGTMVSPTVYARRSLCYLLCDQPDAALRDAMQAQCVYPEWSTAFYMQAVALAKLDM 208
QF+DVGTMVSPTVYARRSLCYLLCDQPDAALRDAMQAQCVYP+W TAFYMQ+VALAKLDM
Sbjct: 416 QFVDVGTMVSPTVYARRSLCYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQSVALAKLDM 475
Query: 209 HKDATDMLNEAAALEEKRQRGGRGS 233
HKDA DMLNEAA LEEKRQ+GGRGS
Sbjct: 476 HKDAADMLNEAAGLEEKRQKGGRGS 500
>GSVIVT01024833001 assembled CDS
Length = 490
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 68/106 (64%)
Query: 123 EICGGKKAWRRSIS*QRVKTAIECISQFIDVGTMVSPTVYARRSLCYLLCDQPDAALRDA 182
E KK + + TAIEC +QFID GTMVSPTV+ARR LCYL+ + P AL DA
Sbjct: 384 ETLNSKKRGDTAFRAKDFTTAIECYTQFIDGGTMVSPTVFARRCLCYLMNEMPQEALGDA 443
Query: 183 MQAQCVYPEWSTAFYMQAVALAKLDMHKDATDMLNEAAALEEKRQR 228
MQAQ V P+WSTAFY+QA AL L M DA + L + LE KR R
Sbjct: 444 MQAQVVSPDWSTAFYLQAAALFSLGMDNDARETLKDGTTLEAKRNR 489
>GSVIVT01034043001 assembled CDS
Length = 491
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 67/106 (63%)
Query: 123 EICGGKKAWRRSIS*QRVKTAIECISQFIDVGTMVSPTVYARRSLCYLLCDQPDAALRDA 182
E KK + + TAI+C +QFID GTMVSPTVYARR L YL+ D P AL DA
Sbjct: 385 ETLNSKKHGDTAFRAKDFTTAIDCYTQFIDGGTMVSPTVYARRCLSYLMNDMPQEALGDA 444
Query: 183 MQAQCVYPEWSTAFYMQAVALAKLDMHKDATDMLNEAAALEEKRQR 228
MQAQ V PEW+TAFY+QA AL L M DA + L + LE K+ +
Sbjct: 445 MQAQVVSPEWATAFYLQAAALFSLGMDTDAQETLKDGTNLEVKKSK 490
>GSVIVT01019759001 assembled CDS
Length = 488
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 81/137 (59%), Gaps = 18/137 (13%)
Query: 92 SQLSIRSWS*RTTRMMKEQMSYHSKSGPNK*EICGGKKAWRRSIS*QRVKTAIECISQFI 151
++LS + W T M+E ++ K G A+R + + AIEC +QFI
Sbjct: 368 TELSFQMW----TNQMQETLNSKKK----------GDVAFRH----KDFRAAIECYTQFI 409
Query: 152 DVGTMVSPTVYARRSLCYLLCDQPDAALRDAMQAQCVYPEWSTAFYMQAVALAKLDMHKD 211
DVGTMVSPTV+ARRSLCYL+ D P AL DA+QAQ + P W A Y+QAVAL+ L +
Sbjct: 410 DVGTMVSPTVFARRSLCYLMSDMPQEALNDAVQAQVISPIWHIASYLQAVALSALGRENE 469
Query: 212 ATDMLNEAAALEEKRQR 228
+ L E + LEEK+ +
Sbjct: 470 SEVTLKEGSVLEEKKNK 486
>GSVIVT01026892001 assembled CDS
Length = 491
Score = 103 bits (257), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 77/136 (56%), Gaps = 18/136 (13%)
Query: 92 SQLSIRSWS*RTTRMMKEQMSYHSKSGPNK*EICGGKKAWRRSIS*QRVKTAIECISQFI 151
++LS + W T M+E ++ K G A+R+ + + AI+C +QFI
Sbjct: 368 NELSFQMW----TDQMQETLNSKKK----------GDAAFRQ----KDFRAAIDCYTQFI 409
Query: 152 DVGTMVSPTVYARRSLCYLLCDQPDAALRDAMQAQCVYPEWSTAFYMQAVALAKLDMHKD 211
DVGTMVSPTV ARRSLCYL+ D P AL DAMQAQ + P W A Y+QA AL L M +
Sbjct: 410 DVGTMVSPTVCARRSLCYLMSDMPQEALNDAMQAQVISPVWHIASYLQAAALTGLGMENE 469
Query: 212 ATDMLNEAAALEEKRQ 227
A L + LE +R
Sbjct: 470 AQAALKDGTTLEAQRN 485
>GSVIVT01013173001 assembled CDS
Length = 495
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 68/104 (65%)
Query: 123 EICGGKKAWRRSIS*QRVKTAIECISQFIDVGTMVSPTVYARRSLCYLLCDQPDAALRDA 182
E+ KK + + K+AI+ S+ + + + S TV+ARR+L YL+ Q + ALRDA
Sbjct: 386 EMLNTKKFGDIAFRDKDFKSAIDYYSKLVVMMPVPSATVFARRALSYLMIGQAELALRDA 445
Query: 183 MQAQCVYPEWSTAFYMQAVALAKLDMHKDATDMLNEAAALEEKR 226
MQAQ PEW TAFY+QA+AL+KL M DA DMLN+ AA E KR
Sbjct: 446 MQAQVCIPEWPTAFYLQALALSKLGMETDAQDMLNDGAAFEAKR 489