Jatropha Genome Database

JcCB0067131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0067131.10 - phase: 0 /partial
         (183 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01006267001 assembled CDS                                       201   2e-52

>GSVIVT01006267001 assembled CDS
          Length = 1035

 Score =  201 bits (511), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/165 (66%), Positives = 126/165 (76%), Gaps = 7/165 (4%)

Query: 19  GYRDAEALFRSKPISQIRNVEATTRKQIQDKKEELRQLVGNRYRDLIDSADSIVLMKSSC 78
           G RDAE+LFRSKPIS+IRNVEATTRKQIQ+KKEELRQLVGNRYRDLIDSADSI+LMKSSC
Sbjct: 4   GNRDAESLFRSKPISEIRNVEATTRKQIQEKKEELRQLVGNRYRDLIDSADSILLMKSSC 63

Query: 79  ESISSNVAXXXXXXXXXXXXXXXETPKFTNSNPVRIRIYGIACRVKYLVDTPENIWGCLD 138
            SISSN++                +P  ++ NP R+ IY +A R+KYLVDTPENIWGCLD
Sbjct: 64  HSISSNIS---SIYSAISSLSASHSPHLSSPNPSRLTIYALASRIKYLVDTPENIWGCLD 120

Query: 139 ESMFLEAAGRYIRAKHVHYNLMQANNANAEWDHTKILSNFPLLQH 183
           ESMFLEAA RY+RA HV   L+     NA+    KIL+NFPLLQH
Sbjct: 121 ESMFLEAASRYVRANHVQTTLID----NADGHRRKILANFPLLQH 161