Jatropha Genome Database

JcCB0066311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0066311.10 - phase: 0 /partial
         (243 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01023525001 assembled CDS                                       376   e-105

>GSVIVT01023525001 assembled CDS
          Length = 345

 Score =  376 bits (965), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/224 (83%), Positives = 201/224 (89%), Gaps = 8/224 (3%)

Query: 20  MRAAMANAEVDDDVLGDDPNALRLQTEMARIMGKEAALFVPSGTMGNLISVLVHCDIRGS 79
           MRAAMA AEVDDDVL  DP A RL+TEMARI GKEAALFVPSGTMGNLISVLVHC++RGS
Sbjct: 1   MRAAMAIAEVDDDVLVCDPTAERLETEMARITGKEAALFVPSGTMGNLISVLVHCEVRGS 60

Query: 80  EVILGHDSHIHIYENGGISTLGGVHPRTVKNNKDGTMDIDLIEAAIRDPKWQLVYPTTRL 139
           EVILG +SHIHIYENGGISTLGGVHPRTVKNN+DGTMDI+LIEAAIRDP+ +LVYPTTRL
Sbjct: 61  EVILGDNSHIHIYENGGISTLGGVHPRTVKNNEDGTMDINLIEAAIRDPRGELVYPTTRL 120

Query: 140 ICLENSHANCGGRCLSVEYTDKVGELAKKYGLKLHIDGARIFNAAAALKVPVHRLVQAAD 199
           ICLEN+HANCGGRCL  EY D+VGELAKK+GLKLHIDGARIFNA+ AL VPVHRL+QAAD
Sbjct: 121 ICLENTHANCGGRCLPAEYIDRVGELAKKHGLKLHIDGARIFNASIALGVPVHRLLQAAD 180

Query: 200 SVSVCLSKGLGAPVGTVIVGSKSFIAKVLTEICFESRILRKTLG 243
           S SVCLSKGLGAPVG+VIVGSKSFIAK        +R LRKTLG
Sbjct: 181 SASVCLSKGLGAPVGSVIVGSKSFIAK--------ARRLRKTLG 216