Jatropha Genome Database

JcCB0065971.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0065971.10 + phase: 0 
         (162 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033413001 assembled CDS                                       249   3e-67
GSVIVT01021959001 assembled CDS                                       195   8e-51
GSVIVT01021949001 assembled CDS                                       186   4e-48
GSVIVT01031462001 assembled CDS                                       180   3e-46
GSVIVT01021922001 assembled CDS                                       129   8e-31
GSVIVT01023414001 assembled CDS                                        99   1e-21
GSVIVT01019902001 assembled CDS                                        55   2e-08
GSVIVT01021953001 assembled CDS                                        48   2e-06

>GSVIVT01033413001 assembled CDS
          Length = 156

 Score =  249 bits (637), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 124/145 (85%), Positives = 130/145 (89%), Gaps = 1/145 (0%)

Query: 17  GEPNVRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKD 76
           G  NVRGS+HF+Q P G THV GRITGL+PGLHGFHIHA GDTTNGC STGPHFNP KKD
Sbjct: 12  GNANVRGSLHFIQDPAGSTHVKGRITGLTPGLHGFHIHALGDTTNGCMSTGPHFNPLKKD 71

Query: 77  HGAPTDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPDDLGKAG 136
           HGAPTDKERHAGDLGNIV GPDG+AEVS+KDMQI LSG HSILGRAVVVHADPDDLG+ G
Sbjct: 72  HGAPTDKERHAGDLGNIVAGPDGVAEVSIKDMQISLSGQHSILGRAVVVHADPDDLGR-G 130

Query: 137 GHELSKTTGNAGARVGCGIIGLHSS 161
           GHELSKTTGNAG RVGCGIIGL SS
Sbjct: 131 GHELSKTTGNAGGRVGCGIIGLQSS 155


>GSVIVT01021959001 assembled CDS
          Length = 152

 Score =  195 bits (495), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 94/137 (68%), Positives = 111/137 (81%), Gaps = 1/137 (0%)

Query: 23  GSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKDHGAPTD 82
           G+I+F +  +G T VTG ++GL PGLHGFH+HA GDTTNGC STGPHFNP  K+HGAP D
Sbjct: 16  GTIYFAEEGDGSTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPED 75

Query: 83  KERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPDDLGKAGGHELSK 142
           + RHAGDLGN++VG DG     + D QIPL+G +SI+GRAVVVHADPDDLGK GGHELSK
Sbjct: 76  ENRHAGDLGNVIVGEDGTVNFKIVDKQIPLTGSNSIVGRAVVVHADPDDLGK-GGHELSK 134

Query: 143 TTGNAGARVGCGIIGLH 159
           +TGNAG RV CG+IGL 
Sbjct: 135 STGNAGGRVACGVIGLQ 151


>GSVIVT01021949001 assembled CDS
          Length = 148

 Score =  186 bits (472), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 93/139 (66%), Positives = 110/139 (79%), Gaps = 5/139 (3%)

Query: 21  VRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKDHGAP 80
           V G+I+F +  +G T VTG ++GL PGLHGFH+HA GDTTNGC STGPHFNP  K+HGAP
Sbjct: 14  VCGTIYFAEEGDGSTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAP 73

Query: 81  TDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPDDLGKAGGHEL 140
            D+ RHAGDLGN++VG DG     +    IPL+G +SI+GRAVVVHADPDDLGK GGHEL
Sbjct: 74  EDENRHAGDLGNVIVGEDGTVNFKI----IPLTGSNSIVGRAVVVHADPDDLGK-GGHEL 128

Query: 141 SKTTGNAGARVGCGIIGLH 159
           SK+TGNAG RV CG+IGL 
Sbjct: 129 SKSTGNAGGRVACGVIGLQ 147


>GSVIVT01031462001 assembled CDS
          Length = 212

 Score =  180 bits (456), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/142 (62%), Positives = 107/142 (75%), Gaps = 1/142 (0%)

Query: 17  GEPNVRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKD 76
           G  +V G +   Q  +GPT V+ RITGL+PG HGFH+H FGDTTNGC STG HFNP    
Sbjct: 69  GTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMT 128

Query: 77  HGAPTDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGRAVVVHADPDDLGKAG 136
           HGAP D  RHAGDLGNIV   +G+AE ++ D QIPLSGP++++GRA+VVH   DDLGK G
Sbjct: 129 HGAPEDDVRHAGDLGNIVANAEGVAEATIVDTQIPLSGPNAVIGRALVVHELEDDLGK-G 187

Query: 137 GHELSKTTGNAGARVGCGIIGL 158
           GHELS TTGNAG R+ CG++GL
Sbjct: 188 GHELSLTTGNAGGRLACGVVGL 209


>GSVIVT01021922001 assembled CDS
          Length = 861

 Score =  129 bits (323), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 75/101 (74%)

Query: 21  VRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKDHGAP 80
           +R   + ++  +G T VTG ++GL PGLHGFH+HA GDTTNGC STGPHFNP  K+HGAP
Sbjct: 23  LRSDSYHIENGDGSTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAP 82

Query: 81  TDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSILGR 121
            D+ RHAGDLGN++VG DG     + D QIPL+G +SI+ R
Sbjct: 83  EDENRHAGDLGNVIVGEDGTVNFKIVDKQIPLTGSNSIVER 123


>GSVIVT01023414001 assembled CDS
          Length = 79

 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 54/75 (72%)

Query: 60  TNGCNSTGPHFNPFKKDHGAPTDKERHAGDLGNIVVGPDGIAEVSVKDMQIPLSGPHSIL 119
           TNGC ST P+FNP +KDHGA  DK  H GDLGN++VG DG     + D QIP +G +SI+
Sbjct: 2   TNGCMSTRPYFNPSRKDHGALEDKNSHVGDLGNVIVGEDGTINFKIVDKQIPFTGSNSIV 61

Query: 120 GRAVVVHADPDDLGK 134
            R VVVH DPDDLGK
Sbjct: 62  ERVVVVHIDPDDLGK 76


>GSVIVT01019902001 assembled CDS
          Length = 253

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 12/114 (10%)

Query: 19  PNVRGSIHFVQRPNGPTHVTGRITGLSPGLHGFHIHAFGDTTNGCNSTGPHFNPFKKDHG 78
           P++ G +   Q       +    +GLS G HG+ I+ FGD T G  STG  FNP  K   
Sbjct: 105 PDIFGVVRLAQVNMELARIEASFSGLSSGKHGWSINEFGDLTRGAASTGKVFNPTNK--- 161

Query: 79  APTDKERHAGDLGNIVVGPDGIA-EVSVK-DMQIPLSGPHSILGRAVVVHADPD 130
             TD+E   GDLG + V  +G A  + VK ++++ +     ++GRAVVV+   D
Sbjct: 162 -GTDEE-PLGDLGTLDVDENGEAFFLGVKQNLRVGV-----LIGRAVVVYGTED 208


>GSVIVT01021953001 assembled CDS
          Length = 80

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 62  GCNSTGPHFNPFKKDHGAPTDKERHAGDLGNIVVGPDGIAEVSVKDMQI 110
            C    P+FNP  K HGA  D+  H GDLGN+++G +G     + D QI
Sbjct: 15  ACQPILPYFNPSGKVHGALEDENHHTGDLGNVIIGENGTINFKIVDKQI 63