Jatropha Genome Database

JcCB0065721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0065721.10 - phase: 0 
         (105 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003552001 assembled CDS                                        76   3e-15

>GSVIVT01003552001 assembled CDS
          Length = 303

 Score = 76.3 bits (186), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 47/57 (82%)

Query: 1  MVSDSDLVTRLREVLQDSDLDTATAGSIRRKLEEEFGVNLSDRKAFIREQIDIYLET 57
          MVSDS+LV RL E L+ SDL+T T   +RRKLEE+FG++LS +KAFIRE +D++L++
Sbjct: 1  MVSDSELVARLHEFLRSSDLNTTTTAIVRRKLEEDFGIDLSGKKAFIREHVDLFLQS 57