Jatropha Genome Database

JcCB0065691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0065691.10 - phase: 0 
         (133 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009122001 assembled CDS                                       198   5e-52
GSVIVT01003618001 assembled CDS                                       167   2e-42

>GSVIVT01009122001 assembled CDS
          Length = 133

 Score =  198 bits (504), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 87/131 (66%), Positives = 115/131 (87%), Gaps = 1/131 (0%)

Query: 1   MAASSSRGGSFYGGAAPYRSKDGLSTRPAASSDEIQLRIDPMHADFDDEISGLRSQVKQL 60
           MA++S RG  +YG A PYRS++GL+TR AA SDEIQLRIDP++AD DDEI+GLRSQ++QL
Sbjct: 1   MASTSHRGAPYYG-ADPYRSREGLTTRAAAGSDEIQLRIDPLNADLDDEITGLRSQIRQL 59

Query: 61  RNVAQEIGSEAKFQKDFLDQLQMTVIKAQAGVKNNIRKLNKSIIKNGGNHIVHVVLFALL 120
           + VAQEI SEA FQ D +++LQMT+++A+AGVKNN+R+L +SII+ G +H++HVVLFALL
Sbjct: 60  KGVAQEIESEATFQNDLINKLQMTLVRAEAGVKNNLRQLKRSIIQEGSSHVIHVVLFALL 119

Query: 121 CFTVVYLWSKV 131
           CFTV+YLWSK+
Sbjct: 120 CFTVIYLWSKI 130


>GSVIVT01003618001 assembled CDS
          Length = 121

 Score =  167 bits (422), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 72/116 (62%), Positives = 96/116 (82%)

Query: 18  YRSKDGLSTRPAASSDEIQLRIDPMHADFDDEISGLRSQVKQLRNVAQEIGSEAKFQKDF 77
           YRS++GLS RP A+SDEIQLRIDP+HAD D+EI+GL  +V  L+ VAQEI SEAKFQ D+
Sbjct: 5   YRSREGLSARPVANSDEIQLRIDPVHADLDEEITGLHKKVTMLKTVAQEIESEAKFQNDY 64

Query: 78  LDQLQMTVIKAQAGVKNNIRKLNKSIIKNGGNHIVHVVLFALLCFTVVYLWSKVLQ 133
           + QLQM + K QAG+KNN+++LN+++ + G NH++HV+LF L CF+VVYLWSK L+
Sbjct: 65  ISQLQMALSKTQAGLKNNMKRLNRAMAQKGSNHVLHVILFGLACFSVVYLWSKHLR 120