Jatropha Genome Database

JcCB0064981.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0064981.30 + phase: 0 
         (291 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009198001 assembled CDS                                       349   9e-97
GSVIVT01029593001 assembled CDS                                       219   2e-57
GSVIVT01012518001 assembled CDS                                       210   8e-55
GSVIVT01009197001 assembled CDS                                       206   1e-53
GSVIVT01012523001 assembled CDS                                       114   7e-26
GSVIVT01012522001 assembled CDS                                        93   1e-19
GSVIVT01007965001 assembled CDS                                        60   1e-09
GSVIVT01032644001 assembled CDS                                        52   3e-07
GSVIVT01025087001 assembled CDS                                        51   5e-07
GSVIVT01038647001 assembled CDS                                        51   6e-07
GSVIVT01027443001 assembled CDS                                        51   6e-07

>GSVIVT01009198001 assembled CDS
          Length = 324

 Score =  349 bits (895), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 171/192 (89%), Positives = 176/192 (91%), Gaps = 8/192 (4%)

Query: 70  SRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTAVPTIEV--------IGDTPK 121
           SRTSELTL+FEGEVYVFPAVTPEKVQAVLLLLGGRDIPT VPTIEV        +GD PK
Sbjct: 25  SRTSELTLAFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTGVPTIEVPFDQSNRGVGDLPK 84

Query: 122 RSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGGSNWDS 181
           RSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSG SNWDS
Sbjct: 85  RSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGPSNWDS 144

Query: 182 AQSCLQDGTPRTETVLRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLS 241
           AQS   D TPR ETVLRRCQHCGVSEN+TPAMRRGPAGPRTLCNACGLMWANKGTLRDLS
Sbjct: 145 AQSLQGDTTPRPETVLRRCQHCGVSENSTPAMRRGPAGPRTLCNACGLMWANKGTLRDLS 204

Query: 242 KGGRNVSIDQIE 253
           KGGRN+S+DQIE
Sbjct: 205 KGGRNLSLDQIE 216


>GSVIVT01029593001 assembled CDS
          Length = 244

 Score =  219 bits (557), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 113/194 (58%), Positives = 139/194 (71%), Gaps = 18/194 (9%)

Query: 73  SELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTAVPTIEVIG------DTPKRSNLS 126
           ++LTLSF+G+VYVF +V+PEKVQAVLLLLGGR++P  +P + + G       TP+R N+ 
Sbjct: 30  NQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPPTMPALSIAGHNRELPGTPQRYNVP 89

Query: 127 RRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGGS-----NWDS 181
            R+ASL+RFREKRKER FDKKIRYTVRKEVA RM R  GQF S K +   S      W+S
Sbjct: 90  HRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKSNHDDSASTTPGWES 149

Query: 182 AQSCLQDGTPRTETVLRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLS 241
           +     +G    E V   C+HCG+SE +TP MRRGP GPRTLCNACGLMWANKGTLRDLS
Sbjct: 150 SWGMAGNGPINQEIV---CRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLS 206

Query: 242 K----GGRNVSIDQ 251
           K     G++ S++Q
Sbjct: 207 KAAPEAGQSPSLNQ 220


>GSVIVT01012518001 assembled CDS
          Length = 254

 Score =  210 bits (534), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 112/182 (61%), Positives = 128/182 (70%), Gaps = 19/182 (10%)

Query: 74  ELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTAVPTIEVI-------GDTPKRSNLS 126
           +LTLSF+GEVYVF AV+PEKVQAVLLLLGG ++PT +P   ++        D   RS+  
Sbjct: 34  QLTLSFQGEVYVFDAVSPEKVQAVLLLLGGYEVPTGIPAPGMVPPNQRGLADFTGRSSQP 93

Query: 127 RRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESS---GG---SNWD 180
           +R ASL RFREKRKERCFDKKIRYTVRKEVA RM RK GQF S K SS   GG   S+W+
Sbjct: 94  QRAASLSRFREKRKERCFDKKIRYTVRKEVALRMQRKKGQFTSSKASSDEVGGGASSDWN 153

Query: 181 SAQSCLQDGTPRTETVLRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDL 240
           +A    QD       +L  C HCG S   TP MRRGPAGPR+LCNACGL WANKG LRDL
Sbjct: 154 AAHGSGQD----EPEIL--CTHCGTSSKTTPMMRRGPAGPRSLCNACGLKWANKGVLRDL 207

Query: 241 SK 242
           S+
Sbjct: 208 SR 209


>GSVIVT01009197001 assembled CDS
          Length = 248

 Score =  206 bits (523), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/189 (56%), Positives = 133/189 (70%), Gaps = 11/189 (5%)

Query: 72  TSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTAVPTIEVI-------GDTPKRSN 124
           T++LTLSF G+VYVF +VT EKV++VLLLLG  ++ +    +E++        D P   N
Sbjct: 28  TNQLTLSFRGQVYVFDSVTHEKVRSVLLLLGTPELSSIAHNMEIVPQNQRALTDFPGPYN 87

Query: 125 LSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGGSNWDSAQS 184
              R ASL RFR+KRKERCFDKKIRY VR+EVA RM R  GQF+S K+S G  +WDS Q 
Sbjct: 88  QPHRAASLNRFRQKRKERCFDKKIRYNVRQEVALRMQRNKGQFSSSKKSEGTFSWDSVQD 147

Query: 185 CLQDGTPRTETVLRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGG 244
             QD +P  ET+   C HCG S  +TP MRRGP GPR+LCNACGL WAN+G+LRDLSK  
Sbjct: 148 SGQDESP-PETL---CTHCGTSSKSTPMMRRGPTGPRSLCNACGLFWANRGSLRDLSKKN 203

Query: 245 RNVSIDQIE 253
           ++ S++QIE
Sbjct: 204 QDHSLNQIE 212


>GSVIVT01012523001 assembled CDS
          Length = 188

 Score =  114 bits (284), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 53/76 (69%), Positives = 58/76 (76%), Gaps = 5/76 (6%)

Query: 178 NWDSAQSCLQDGTPRTETVLRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTL 237
           NWD +      GTP  E V RRCQHCG+SE +TPAMRRGPAGPR+LCNACGLMWANKGTL
Sbjct: 5   NWDPSS-----GTPCPEYVFRRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTL 59

Query: 238 RDLSKGGRNVSIDQIE 253
           RDLSKG R +   Q E
Sbjct: 60  RDLSKGSRMIPFGQDE 75


>GSVIVT01012522001 assembled CDS
          Length = 177

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 75/155 (48%), Gaps = 8/155 (5%)

Query: 1   MAAANPQPLQARPYEEHVREPIRIXXXXXXXXXXXXXXXXXXXHMNSXXXXXXXXXXXXX 60
           M   NP+PLQA P+EEH  + +++                      +             
Sbjct: 1   METVNPRPLQALPFEEHDDDSMQVPIEINGNEGGFEVEDVTGGGGEAVSGGEGGRMSSVN 60

Query: 61  XXXXXXXXXSRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDIPTAVPTIEV----- 115
                     RTSELT+SFEGEVYVF AVTP+KVQAVLLLLGG + P++V + E      
Sbjct: 61  ADEKSSVVAQRTSELTISFEGEVYVFHAVTPDKVQAVLLLLGGHETPSSVSSSEFLLQQN 120

Query: 116 ---IGDTPKRSNLSRRIASLVRFREKRKERCFDKK 147
              + D  K SNL RRIASL+ F +  K     +K
Sbjct: 121 MKGLVDASKCSNLPRRIASLISFVKNGKRDALRRK 155


>GSVIVT01007965001 assembled CDS
          Length = 533

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/47 (59%), Positives = 35/47 (74%)

Query: 121 KRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQF 167
           K   + RR A+L++FR+KRKERCFDKKIRY  RK +A+R  R  GQF
Sbjct: 437 KLGKVDRREAALIKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQF 483


>GSVIVT01032644001 assembled CDS
          Length = 769

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 33/42 (78%)

Query: 126 SRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQF 167
           ++R A+L +FR+KRKERCF+KK+RY  RK +A++  R  GQF
Sbjct: 713 AQREAALNKFRQKRKERCFEKKVRYQSRKRLAEQRPRIRGQF 754


>GSVIVT01025087001 assembled CDS
          Length = 103

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 37/51 (72%)

Query: 117 GDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQF 167
           G+  +    ++R A+L +FR+KRKERCF+KK+RY  RK++A++  R  GQF
Sbjct: 22  GNRVEEDRFAQREAALTKFRQKRKERCFEKKVRYQSRKKLAEQRPRIRGQF 72


>GSVIVT01038647001 assembled CDS
          Length = 747

 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 32/41 (78%)

Query: 127 RRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQF 167
           +R A+L +FR KRK+RCF+KK+RY  RK++A++  R  GQF
Sbjct: 559 QREAALTKFRLKRKDRCFEKKVRYESRKKLAEQRPRVKGQF 599


>GSVIVT01027443001 assembled CDS
          Length = 593

 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 33/42 (78%)

Query: 126 SRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQF 167
           ++R A+L++FR KRK+RCF+KK+RY  RK +A++  R  GQF
Sbjct: 539 TQREAALMKFRLKRKDRCFEKKVRYQSRKRLAEQRPRVKGQF 580