Jatropha Genome Database

JcCB0064981.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0064981.20 + phase: 0 /partial/short
         (43 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009197001 assembled CDS                                        54   2e-08

>GSVIVT01009197001 assembled CDS
          Length = 248

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 33/43 (76%)

Query: 1   GTLRDLSKKTQEHSLTPVEQGEAEANDSDSGNAIHTHNNLVTY 43
           G+LRDLSKK Q+HSL  +E+G+ EANDSD G + + +NN V +
Sbjct: 194 GSLRDLSKKNQDHSLNQIERGDGEANDSDCGTSGYINNNHVAF 236