Jatropha Genome Database

JcCB0064411.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0064411.20 - phase: 1 /pseudo/partial
         (199 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016801001 assembled CDS                                        55   2e-08
GSVIVT01035382001 assembled CDS                                        55   2e-08

>GSVIVT01016801001 assembled CDS
          Length = 966

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 105 DRTEESGNSKPNYMNLTESTKAKRKTTNHLSHRIQRQSMDEFQFLKRSAAFSNEDSKSSA 164
           +  EE+  S+P+YMNLTES KAK+K + + S    R  M++ Q   +S A S  D+KSS 
Sbjct: 874 EMVEENHTSRPSYMNLTESIKAKQKASKYSSP--PRPLMEDAQLHMKSMAISTGDTKSST 931

Query: 165 GSDHPSINLSKPLCLPTRLDK 185
           GS  PS  L K L    +LD+
Sbjct: 932 GSYTPSAKLCKDLYPTIQLDR 952


>GSVIVT01035382001 assembled CDS
          Length = 404

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 31/39 (79%)

Query: 151 RSAAFSNEDSKSSAGSDHPSINLSKPLCLPTRLDKNSMK 189
           +S  + N D+KSSAGSD PS+N SKPL LPTR+DK S+K
Sbjct: 356 KSGLYCNVDTKSSAGSDPPSVNFSKPLYLPTRMDKASVK 394



 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 1/43 (2%)

Query: 28  KSCADSLASKNSKSSEQSFVKVRKNNVSTRISAK-PPIGQVTR 69
           K C + L+  +SKSSE   VKVR+NNV+TRISAK PPIG VTR
Sbjct: 282 KHCMNPLSGTHSKSSEPGSVKVRRNNVTTRISAKPPPIGLVTR 324