Jatropha Genome Database

JcCB0064191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0064191.10 + phase: 1 /partial
         (205 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008825001 assembled CDS                                       260   2e-70
GSVIVT01008841001 assembled CDS                                        55   2e-08
GSVIVT01019825001 assembled CDS                                        48   3e-06

>GSVIVT01008825001 assembled CDS
          Length = 341

 Score =  260 bits (665), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 131/156 (83%), Positives = 142/156 (91%), Gaps = 2/156 (1%)

Query: 13  NY-GKIIEPLASRCAKFRFKPLSEDIMSDRILYICKEEGLNIDAEALSTLSSISQGDLRR 71
           NY  +IIEPLASRCAKFRFKPLSE+IMS RIL+ICKEE LN+D+EALSTLSSISQGDLRR
Sbjct: 153 NYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKEEELNLDSEALSTLSSISQGDLRR 212

Query: 72  AITYLQGAARLFGSTISSKDLISVSGVIPKEFLGAFYAACKSGDFDLANKEVNNIIAEGY 131
           AITYLQGAARLFGS ISSKDLISVSGV+P+  + A +AACKSGDFD ANKEVNN+IAEGY
Sbjct: 213 AITYLQGAARLFGSIISSKDLISVSGVVPQHVVQALFAACKSGDFDSANKEVNNVIAEGY 272

Query: 132 PVSQMLVQLFDLVVEADDISDEQKARICKSLAAADK 167
           PVSQML QLFD+VVEA DISDEQKARICK LA ADK
Sbjct: 273 PVSQMLYQLFDVVVEA-DISDEQKARICKRLAEADK 307


>GSVIVT01008841001 assembled CDS
          Length = 360

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 40/66 (60%)

Query: 12  DNYGKIIEPLASRCAKFRFKPLSEDIMSDRILYICKEEGLNIDAEALSTLSSISQGDLRR 71
           ++  KII  L SRC +FRF PL    +++R+ ++   E L++    L+ L  +S GD+R+
Sbjct: 175 NHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAEKLDVSESGLAALVRLSSGDMRK 234

Query: 72  AITYLQ 77
           A+  LQ
Sbjct: 235 ALNILQ 240


>GSVIVT01019825001 assembled CDS
          Length = 330

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 1/133 (0%)

Query: 16  KIIEPLASRCAKFRFKPLSEDIMSDRILYICKEEGLNIDAEALSTLSSISQGDLRRAITY 75
           KIIEP+ SRCA  RF  LS+  +  R++ + + E +    E L  +   + GD+R+A+  
Sbjct: 152 KIIEPIQSRCAIVRFSRLSDQEILGRLMVVVEAEKVPFVPEGLEAIIFTADGDMRQALNN 211

Query: 76  LQGAARLFGSTISSKDLISVSGVIPKEFLGAFYAACKSGDFDLANKEVNNIIAEGYPVSQ 135
           LQ     F   ++ +++  V        +         G FD A   +  +   GY  + 
Sbjct: 212 LQATYSGF-RFVNQENVFKVCDQPHPLHVKNMVRNVLEGKFDDACYGLKQLYDLGYSPTD 270

Query: 136 MLVQLFDLVVEAD 148
           ++  LF ++   D
Sbjct: 271 IITTLFRIIKNYD 283