Jatropha Genome Database

JcCB0063711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0063711.10 - phase: 2 /partial
         (394 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015509001 assembled CDS                                       549   e-157

>GSVIVT01015509001 assembled CDS
          Length = 660

 Score =  549 bits (1415), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 264/372 (70%), Positives = 315/372 (84%), Gaps = 3/372 (0%)

Query: 26  QVFDMVNREAFNQSLGVNVTGIQENYLQLSISTGTSVFLSLVPSVEDEQTADGGGHQISE 85
           QVFD+VNREAFN S GVNVTGI+ENYLQL+I  G SVF+SLVPS +DE+TADG G Q  E
Sbjct: 289 QVFDLVNREAFNSSSGVNVTGIRENYLQLNIGQGASVFMSLVPSGQDEKTADGMGMQNLE 348

Query: 86  TAVLPLDSIDEVKLPEEKHVYLHKKSRFPNRISCEIYLQQIFHEHVFLKAKDRPLPTG-T 144
           +A+LP+D+ D VKL + KH    KKS FPNRIS EIYL+Q+FHEHVF++AKD+ +  G T
Sbjct: 349 SAILPMDTFDGVKLSDGKHDNDKKKSGFPNRISSEIYLKQLFHEHVFVRAKDKHISAGRT 408

Query: 145 RVSSQ-LKDGSGLLGHFCMTVAHRIFSNKVLMELENVICKVPYLHLISHPTWHSRTSSWT 203
           + SSQ  KDG GLLGHFCM++AHRIFS+KVLMELEN++ +VPYLHL+SHPTWHSRTSSWT
Sbjct: 409 QPSSQPAKDGFGLLGHFCMSLAHRIFSSKVLMELENLVSRVPYLHLLSHPTWHSRTSSWT 468

Query: 204 IFMKVPQSILHASSHSQTSDMKSMKSDIKTEFRTKVVVNDDSINVEAEGAPNVVGLFKGS 263
           + MKVP+S  H    ++TSD+ ++K+ IKT FRTKVV+NDD INVE +GAPNVVGLFKGS
Sbjct: 469 LLMKVPESSFHPGCQTRTSDIHNVKNIIKTHFRTKVVINDDCINVEGDGAPNVVGLFKGS 528

Query: 264 SDDTCSMNKYDCDLADLPAIILQQVASQVIRWLHEEALTVGIKANRDFLSLSFELDQGEV 323
           S+D CSMN+YDCDLAD+P I+LQQVASQVIRWLHEEAL VGIKANRDFL LSFE+DQGE+
Sbjct: 529 SEDVCSMNRYDCDLADIPVILLQQVASQVIRWLHEEALKVGIKANRDFLCLSFEMDQGEM 588

Query: 324 LSMVAHVDPEDVEGCISWWLVMEDGFAEK-KLHMDIADDASECRKFLGYLPLDVLYSTLM 382
           LS+VAHV+P+D +GCISWWLVM+DGF+E  K H D  D  SE RKFLG+L L+VLYSTLM
Sbjct: 589 LSLVAHVNPDDPQGCISWWLVMDDGFSEDLKFHTDAPDGGSEYRKFLGHLSLEVLYSTLM 648

Query: 383 DLVTLCSGGGSH 394
           DLV+LC+GGG H
Sbjct: 649 DLVSLCNGGGRH 660