Jatropha Genome Database

JcCB0063521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0063521.10 - phase: 0 /pseudo
         (273 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013506001 assembled CDS                                       108   2e-24
GSVIVT01030585001 assembled CDS                                       100   6e-22
GSVIVT01013538001 assembled CDS                                        91   5e-19
GSVIVT01026027001 assembled CDS                                        74   5e-14
GSVIVT01031692001 assembled CDS                                        70   8e-13
GSVIVT01008137001 assembled CDS                                        59   3e-09
GSVIVT01000395001 assembled CDS                                        58   5e-09
GSVIVT01010911001 assembled CDS                                        50   1e-06

>GSVIVT01013506001 assembled CDS
          Length = 423

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 131/269 (48%), Gaps = 46/269 (17%)

Query: 3   SNSQNILPKDLAIDILTLLPVKSLMRFKCVSKSWCATIRSSDFISQHFKK--KNSCHLLV 60
           S S N L ++L IDI   LPVKS++RF+CV KSWC      DFIS H ++   NS   L+
Sbjct: 15  SMSGNFLSENL-IDIHLRLPVKSIVRFRCVCKSWCTLFDDPDFISMHLRQASANSNGRLL 73

Query: 61  HYYVSPYADDLVELFLDETLEDLSHQHFGLPIP----FSKLHGPCNGIFCVSDGS---SY 113
             ++S    ++  L  +    ++  +   +P+P    + ++ G  NG+ C+++ +   SY
Sbjct: 74  FKHLSSSEQEIYSLRSNIAFAEV--RRLEVPVPSKTDYYQIVGSSNGLICLTESNFKGSY 131

Query: 114 A-----LWNPATKELQHLPA----TLAKPSLPVPLTSGGDICGFGLDPITNNFKVLVIQG 164
                 LWNPA +E Q LP         P + V L       GF   P+ N++KV+ I  
Sbjct: 132 LSLNLFLWNPAIREFQTLPKYHINNFTSPLMVVGL-------GFAFHPVINDYKVVRIVY 184

Query: 165 FLSEYHFFAQVMLHTFGTNVWRELEIGQDYSLPHGTLSQDYVVTSSSCYTFLNGVHYWLA 224
           F+      A V  ++  T  WR+++        H  +S+          TF+NG  +WLA
Sbjct: 185 FMRNKTSEADV--YSLRTGSWRKVD-ANICCYIHSNVSR----------TFINGALHWLA 231

Query: 225 SH-----NFDNRILSFHMSNDEFQEIQVP 248
                  N DN ILSF M+ D F+EI +P
Sbjct: 232 GKKNEMDNTDNLILSFDMAKDVFKEIMLP 260


>GSVIVT01030585001 assembled CDS
          Length = 423

 Score =  100 bits (250), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 143/293 (48%), Gaps = 42/293 (14%)

Query: 3   SNSQNILPKDLAIDILTLLPVKSLMRFKCVSKSWCATIRSSDFISQHFKKK---NSCHLL 59
           S S N +  +  +D+L  LPVKS++RFKCV +SW       DFI+ + ++    N+C +L
Sbjct: 15  SMSGNFILSENLVDVLLRLPVKSIIRFKCVCQSWQTLFNDPDFINMNLRRAITHNNCCML 74

Query: 60  VHYYVSPYADDLVELFLDETLEDLSHQHFGLPIP----FSKLHGPCNGIFCVSDGSSYA- 114
           +  Y+S   +++  L  D+   +   +   +P+P    +  + G  NG+ C+++ ++   
Sbjct: 75  LK-YLSSSEEEVYSLRCDKDFAEF--RRLQVPVPSKTDYYHIVGSSNGLICLTESNNKGS 131

Query: 115 -------LWNPA-TKELQHLPATLAKPSLPVPLTSGGDICGFGLDPITNNFKVLVIQGFL 166
                  LWNP+ T + + LP  L    +  P    G   GF   P  +++KV+ I  FL
Sbjct: 132 YVTVDTFLWNPSVTAQWKPLPKYLINNMMTSPFMVVG--LGFAFHPQIDDYKVVRIVYFL 189

Query: 167 SEYHFFAQVMLHTFGTNVWRELEIGQDYSLPHGTLSQDYVVTSSSCYTFLNGVHYWLASH 226
               +  +V +++   + W+ ++  + +   H T+S+          TF+NG  +WLA+ 
Sbjct: 190 KSKTY--EVHVYSLKQDAWKNID-AKVHCHIHDTVSR----------TFVNGALHWLAAK 236

Query: 227 NFDNR------ILSFHMSNDEFQEIQVPY--YSLYATHETLVIYH*LIALLLY 271
               R      ILSF M  D  +E+ +P   Y   +T + L  Y  L+++L+Y
Sbjct: 237 KNQGRGKSDDLILSFDMVEDNLREMILPEFGYDESSTQKCLADYKGLLSVLVY 289


>GSVIVT01013538001 assembled CDS
          Length = 711

 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 123/259 (47%), Gaps = 46/259 (17%)

Query: 9   LPKDLAIDILTLLPVKSLMRFKCVSKSWCATIRSSDFISQHFKKKNSCHLLVHYYVSPYA 68
           +P+ + +DIL+ LPVKSL+RF+CV K+WC  I    F+  H ++++    ++   V    
Sbjct: 4   IPEVIMVDILSRLPVKSLLRFRCVCKAWCTLISHPQFVETHLRQQHK-RPVIGLVVPHSV 62

Query: 69  DDLVELFLDETLEDLSHQHFGLPIPF-SKLHGPCNGIFCVSD----------GSSYALWN 117
           DD   L  D+   DL   H G+P    + +   CNG+ CV D               LWN
Sbjct: 63  DD--PLHKDDLAVDL-ELHLGIPNKRTTTVLDSCNGLLCVVDCYYGFYSLKPPQKLILWN 119

Query: 118 PATKELQHLPATLAKPSLPVPLTSGGDIC--GFGLDPITNNFKVLVIQGFLSEYHFFAQV 175
           P+T++  H         +P P   G   C   F  DP ++++K++ I  FL +      +
Sbjct: 120 PSTRQCNH---------IPCPSFVGYQNCMYSFFYDPGSDDYKIVRIFTFLGKDK--TGI 168

Query: 176 MLHTFGTNVWRELEIGQDYSLPHGTLSQDYVVTSSSCYTFLNGVHYWLA----SHNFDNR 231
            + T  TN WR +E  + +S   G  S           T+ NG  +WLA     +  D R
Sbjct: 169 DIFTLKTNKWRRVE--ETHSSVIGYWSA----------TYFNGNLHWLAFRYGGYGEDER 216

Query: 232 --ILSFHMSNDEFQEIQVP 248
             +++F +  ++FQE+++P
Sbjct: 217 SSMVAFSLREEKFQEMELP 235


>GSVIVT01026027001 assembled CDS
          Length = 372

 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 38/191 (19%)

Query: 9   LPKDLAIDILTLLPVKSLMRFKCVSKSWCATIRSSDFISQHFK-------KKNSCHLLVH 61
           +P ++ ++IL LLPVKSLMRFKCVSKSW   I   DF  +          +  +  L++H
Sbjct: 26  IPDEIILEILCLLPVKSLMRFKCVSKSWREMISDPDFEKKQLAVAARDSGEVYNSRLIMH 85

Query: 62  Y-YVSPYADDLVELFLDETLEDLSHQHFGLPIPFSKLHGPCNGIFCVSDGSSYALWNPAT 120
           Y  +   +  L  LF +     ++H++            P N I  V        WNP+T
Sbjct: 86  YPSMKLKSCPLSCLFYEPVGHSVNHEY------------PENDIIFV--------WNPST 125

Query: 121 KELQHLPATLAKPSLPVPLTSGGDIC--GFGLDPITNNFKVLVIQGFLSEYHFFAQVMLH 178
           +E + LP        P+       +   GFG D I +++KV  +  +    ++  QV + 
Sbjct: 126 REFRRLP--------PISFMQCFHLVAYGFGYDSIADDYKVTRVGCYCIGRYYEYQVRVF 177

Query: 179 TFGTNVWRELE 189
           +   NVWR++E
Sbjct: 178 SLRGNVWRKIE 188


>GSVIVT01031692001 assembled CDS
          Length = 357

 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 110/260 (42%), Gaps = 43/260 (16%)

Query: 9   LPKDLAIDILTLLPVKSLMRFKCVSKSWCATIRSSDFISQHFK------KKNSCHLLV-- 60
           LP  +  +IL  LPVKSL+R +CV K+W   I    F+  H +      +   C L    
Sbjct: 4   LPLHIIENILLRLPVKSLIRSRCVCKAWRTLISHPHFVKSHLRLPQTQARTQFCTLNYGE 63

Query: 61  ----HYYVSPYADDLVELFLDETLEDLSHQHFGLPIPFS---KLHGPCNGIFCVSD-GSS 112
               +Y V   +    E F D+    L+  +      F     L   C+G+ C+ D  + 
Sbjct: 64  PGDNYYLVVGASTKDCEAFSDDNGGALAFDYLFDIGGFKYEVVLLDSCDGLLCLVDLANK 123

Query: 113 YALWNPATKELQHLPATLAKPSLPVPLTSGGDIC-GFGLDPITNNFKVLVIQGFLSEYHF 171
             LWNP+T++   LP        P P       C GFG D   +++KV ++   +   +F
Sbjct: 124 IVLWNPSTRQCNQLP--------PNPNVLDFLGCHGFGYDSFADDYKVFLVS--MLNPNF 173

Query: 172 FAQVMLHTFGTNVWRELEIGQDYSLPHGTLSQDYVVTSSSCYTFLNGVHYWLASH---NF 228
              V + +  +N W+ ++             + +   +  C T L+G  +W+A      F
Sbjct: 174 ETVVDVFSLKSNKWKRIQ------------EKHHTRAARMCATVLHGALHWVAYDPILGF 221

Query: 229 DNRILSFHMSNDEFQEIQVP 248
           D  I++F    + F+E+ +P
Sbjct: 222 DT-IMAFDFEKERFREMAIP 240


>GSVIVT01008137001 assembled CDS
          Length = 552

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 112/255 (43%), Gaps = 36/255 (14%)

Query: 7   NILPKDLAIDILTLLPVKSLMRFKCVSKSWCATIRSSDFISQHFKK---KNSCHLLVHYY 63
           ++LP +L  +IL+ LP++ ++R + V K+W + I+S  FI+   +K   + S  +L   +
Sbjct: 153 DLLP-ELISEILSRLPIELILRCRSVCKTWNSVIQSPLFINLQARKSHNQPSRVILKPIF 211

Query: 64  VSPYADDLVELFLDETLEDLSHQHFGLPIPFSKLH--GPCNGIFCVSDGSSYA---LWNP 118
               A  +  LFL +T E  S +       FS L     CNG+ C++  S      + NP
Sbjct: 212 GGVTATTMHSLFLLDTEERKSRRIHDKSWRFSGLQIMSSCNGLLCITSDSELGPVYISNP 271

Query: 119 ATKELQHLPATLAKPSLPVPLTSGGDICGFGLDPITNNFKVLVIQGFL----SEYHFFAQ 174
            T+E   LP+     SL           G G D  ++N K +V++ +     S+ + F  
Sbjct: 272 ITREFVILPSPETGFSLL------RHQVGLGFD--SSNGKYIVVRAYTDKSKSQVNKFEA 323

Query: 175 VMLHTFGTNVWRELEIGQDYSLPHGTLSQDYVVTSSSCYTFLNGVHYWLASHNFDNR-IL 233
           +ML   G N WR L           T+       + +   F NG  +W          +L
Sbjct: 324 IML---GENSWRSL-----------TVPDIIAECTINGSVFWNGALHWKIKKKPGRECML 369

Query: 234 SFHMSNDEFQEIQVP 248
           SF +S+ +F   + P
Sbjct: 370 SFDVSSGKFAVTRFP 384


>GSVIVT01000395001 assembled CDS
          Length = 260

 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 20/129 (15%)

Query: 11  KDLAIDILTLLPVKSLMRFKCVSKSWCATIRSSDFISQHFKKKNSCHLLVHYYVSPYADD 70
           +D+  +IL+ LPVKSL+  K VSK W   I S DF+    +       L+ +    Y ++
Sbjct: 20  EDITTNILSRLPVKSLLMCKSVSKRWRRLICSPDFVLSQLRWSRENPSLIFFLR--YENE 77

Query: 71  LVELFLDETLEDLSHQHFGLPIPFSKLHGPC------NGIFCVSD--GSSYA--LWNPAT 120
           L+++   E  E        +P+PF +    C      NG  C+++  G ++   +WNPAT
Sbjct: 78  LIKI-SGEVFER-------IPLPFGQRPNNCDMICSFNGFICLTNYIGRNHNILIWNPAT 129

Query: 121 KELQHLPAT 129
           +E+Q LP T
Sbjct: 130 QEVQLLPTT 138


>GSVIVT01010911001 assembled CDS
          Length = 415

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 96/227 (42%), Gaps = 36/227 (15%)

Query: 12  DLAIDILTLLPVKSLMRFKCVSKSWCATIRSSDFISQHFKKKNSCHLLVHYYVSPYADDL 71
           DL  +I    PVK L+RF+ VSK W + I    F  +H ++ ++    V   +     D 
Sbjct: 37  DLLTEIFLRTPVKPLLRFRSVSKRWLSLISDPHFCHRHARRSSASVPGVLLGLPNSNFDF 96

Query: 72  VELFLDETLED--LSHQHFGLPIPFSKLHGPCNGIFCVSD----GSS--YALWNPATKEL 123
           +     +  E    S    G P+    L   CNG+ C S     G+S  Y + N AT+  
Sbjct: 97  ISFDEKKASEPPLRSLDFIGDPLGVKVLQ-VCNGLLCCSTVRSLGTSRNYYICNLATRRF 155

Query: 124 QHLPATLAKPSLPVPLTSGGDICGFGL----DPITNN-FKVLVIQGF-LSEYHFFAQVML 177
             LP          P +SGG    FG+    DP  +  + V+ ++   +S  H+  Q+ +
Sbjct: 156 SVLPP---------PCSSGGRDTVFGINLAFDPSKSPYYSVICVRSCEVSISHY--QIEI 204

Query: 178 HTFGTNVWRELEIGQDYSLPHGTLSQDYVVTSSSCYTFLNGVHYWLA 224
           ++ GT  WR    G+ +  P   +  D V        F NG  +W++
Sbjct: 205 YSSGTGDWR--LSGKPFRAPFDMVFYDGV--------FWNGAVHWIS 241