Jatropha Genome Database

JcCB0062371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0062371.10 + phase: 0 
         (250 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015122001 assembled CDS                                       361   e-100
GSVIVT01016791001 assembled CDS                                       352   1e-97
GSVIVT01035442001 assembled CDS                                       344   2e-95
GSVIVT01023128001 assembled CDS                                       305   1e-83
GSVIVT01011162001 assembled CDS                                       270   6e-73
GSVIVT01032811001 assembled CDS                                       251   3e-67
GSVIVT01015137001 assembled CDS                                        95   3e-20
GSVIVT01015123001 assembled CDS                                        53   2e-07

>GSVIVT01015122001 assembled CDS
          Length = 252

 Score =  361 bits (927), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/252 (71%), Positives = 184/252 (73%), Gaps = 2/252 (0%)

Query: 1   MDGGAQYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWXX 60
           MDGG QYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNE W  
Sbjct: 1   MDGGPQYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNELWEV 60

Query: 61  XXXXXXXXXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR 120
                           GINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR
Sbjct: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR 120

Query: 121 KRLFTMINDLPTIFEVVTGSVKKQAKDXXXXXXXXXXXXXXXXXX--XXXXXXFSKGQPK 178
           KRLF MINDLPTIFEVVTG+ KKQ K+                             GQPK
Sbjct: 121 KRLFNMINDLPTIFEVVTGAAKKQVKEKSSVSNHSSNKSKSNSKVRGSESAKYLKGGQPK 180

Query: 179 XXXXXXXXXXXXXXXXTLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQY 238
                           TLCGACGENYA+DEFWICCDICEKWFHGKCVKITPARAEHIKQY
Sbjct: 181 DEEEGLDEVDEEEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQY 240

Query: 239 KCPSCSNKRARP 250
           KCPSCSNKRARP
Sbjct: 241 KCPSCSNKRARP 252


>GSVIVT01016791001 assembled CDS
          Length = 261

 Score =  352 bits (902), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 178/261 (68%), Positives = 184/261 (70%), Gaps = 11/261 (4%)

Query: 1   MDGGAQYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWXX 60
           MDGGA YNPRTVEEVFRDFKGRRAGMIKALTTDV+EFYQQCDPEKENLCLYGFPNE W  
Sbjct: 1   MDGGANYNPRTVEEVFRDFKGRRAGMIKALTTDVDEFYQQCDPEKENLCLYGFPNELWEV 60

Query: 61  XXXXXXXXXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR 120
                           GINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR
Sbjct: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR 120

Query: 121 KRLFTMINDLPTIFEVVTGSVKKQAKDXXXX-----------XXXXXXXXXXXXXXXXXX 169
           KRLF MINDLPTIFEVVTG+ KKQ K+                                 
Sbjct: 121 KRLFNMINDLPTIFEVVTGTAKKQVKEKSSVSNHSSNKSKSNSKVVPQQQQPQQRGSESQ 180

Query: 170 XXFSKGQPKXXXXXXXXXXXXXXXXTLCGACGENYAADEFWICCDICEKWFHGKCVKITP 229
             +SK   K                TLCGACGENYA+DEFWICCDICEKWFHGKCVKITP
Sbjct: 181 GKYSKTPQKDEDEGLEEEEEDEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITP 240

Query: 230 ARAEHIKQYKCPSCSNKRARP 250
           ARAEHIKQYKCPSCSNKR+RP
Sbjct: 241 ARAEHIKQYKCPSCSNKRSRP 261


>GSVIVT01035442001 assembled CDS
          Length = 253

 Score =  344 bits (882), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 177/252 (70%), Positives = 184/252 (73%), Gaps = 3/252 (1%)

Query: 1   MDGGAQYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWXX 60
           MDGG  YNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDP+KENLCLYGFP+EQW  
Sbjct: 1   MDGGPPYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPDKENLCLYGFPSEQWEV 60

Query: 61  XXXXXXXXXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR 120
                           GINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR
Sbjct: 61  NLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADR 120

Query: 121 KRLFTMINDLPTIFEVVTGSVKKQAKDXXXXXXXXXXXXXXXXXX-XXXXXXFSKG-QPK 178
           KRLF MINDLPTIFEVVTG+ KKQ K+                         +SK  Q K
Sbjct: 121 KRLFNMINDLPTIFEVVTGTAKKQVKEKSSVSNHSSNKSKSNSKRGSESQGKYSKPLQAK 180

Query: 179 -XXXXXXXXXXXXXXXXTLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQ 237
                            TLCGACGENYA+DEFWICCD+CEKWFHGKCVKITPARAEHIKQ
Sbjct: 181 DEDEEGLEEEEEEEHGETLCGACGENYASDEFWICCDVCEKWFHGKCVKITPARAEHIKQ 240

Query: 238 YKCPSCSNKRAR 249
           YKCPSCSNKRAR
Sbjct: 241 YKCPSCSNKRAR 252


>GSVIVT01023128001 assembled CDS
          Length = 253

 Score =  305 bits (781), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/243 (61%), Positives = 166/243 (68%), Gaps = 2/243 (0%)

Query: 9   PRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWXXXXXXXXXX 68
           PRTVEEVF D++GRRAG+IKALTT+VE+FYQQCDPEKENLCLYG PNE W          
Sbjct: 10  PRTVEEVFSDYRGRRAGLIKALTTEVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVP 69

Query: 69  XXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFTMIN 128
                   GINFARDGMQEKDWLSLVAVHSD+WLLAVAFYFGARFGF K++RKRLF MIN
Sbjct: 70  PELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKSERKRLFQMIN 129

Query: 129 DLPTIFEVVTGSVKKQAKDXXXXXXXXXXXXXXXXXXXXXXXXFSKGQP--KXXXXXXXX 186
           +LPTIFEVVTG  +++                             K  P  K        
Sbjct: 130 ELPTIFEVVTGVKQQRDMSGNHNNSNKSKSSGKMSRQPEPQTKGVKVSPPSKEEDESGDE 189

Query: 187 XXXXXXXXTLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNK 246
                    +CGACG+NYA DEFWICCD+CEKWFHGKCVKITPA+AEHIKQYKCP CSNK
Sbjct: 190 DAEDDEQGAICGACGDNYANDEFWICCDVCEKWFHGKCVKITPAKAEHIKQYKCPGCSNK 249

Query: 247 RAR 249
           RAR
Sbjct: 250 RAR 252


>GSVIVT01011162001 assembled CDS
          Length = 241

 Score =  270 bits (689), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 135/242 (55%), Positives = 157/242 (64%), Gaps = 8/242 (3%)

Query: 8   NPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWXXXXXXXXX 67
           +PRTVEE+F+D+ GRRAG+++ALT DV+EFY+ CDPEKENLCLYG PN+ W         
Sbjct: 7   SPRTVEEIFKDYSGRRAGVVRALTYDVDEFYKLCDPEKENLCLYGHPNDTWEVTLPAEEV 66

Query: 68  XXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFTMI 127
                    GINFARDGM  KDWLSLVAVHSD+WLL+ AFY GAR   ++ +RKRLF+MI
Sbjct: 67  PPELPEPALGINFARDGMNRKDWLSLVAVHSDSWLLSAAFYLGARL--NRNERKRLFSMI 124

Query: 128 NDLPTIFEVVTGSVKKQAKDXXXXXXXXXXXXXXXXXXXXXXXXFSKGQPKXXXXXXXXX 187
           NDLPT+FEVVT   +K  KD                          K  PK         
Sbjct: 125 NDLPTVFEVVTE--RKPIKDKPSVDSGSKSRVSTKRGNEGQV----KSTPKLAADESFEE 178

Query: 188 XXXXXXXTLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKR 247
                  TLCG+CG NY ADEFWI CDICE+WFHGKCVKITPA+AE IKQYKCPSCS KR
Sbjct: 179 EEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLKR 238

Query: 248 AR 249
           +R
Sbjct: 239 SR 240


>GSVIVT01032811001 assembled CDS
          Length = 241

 Score =  251 bits (640), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 129/242 (53%), Positives = 154/242 (63%), Gaps = 9/242 (3%)

Query: 8   NPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPNEQWXXXXXXXXX 67
           +PRTVE++F+D+K RR+G+++ALT DV+EFY  CDPEKENLCLYG PN  W         
Sbjct: 7   SPRTVEDIFKDYKARRSGVVQALTFDVDEFYALCDPEKENLCLYGHPNGSWHVAMPAEEV 66

Query: 68  XXXXXXXXXGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFTMI 127
                    GINFARDGM  +DWL+LVAVHSD+WLL+VAFYFGA    ++ DRKRLF+MI
Sbjct: 67  PPELPEPALGINFARDGMNRRDWLALVAVHSDSWLLSVAFYFGA--SLNRNDRKRLFSMI 124

Query: 128 NDLPTIFEVVTGSVKKQAKDXXXXXXXXXXXXXXXXXXXXXXXXFSKGQPKXXXXXXXXX 187
           NDLPT+FE VT    K  KD                         +  +P+         
Sbjct: 125 NDLPTVFEAVTQG--KLVKDKPTMDSGSKSKSSTKRSIDGQVR--NDLRPR---DEGYVE 177

Query: 188 XXXXXXXTLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKR 247
                  TLCG+CG NY ADEFWI CDICE+WFHGKCVKITPA+AE IKQYKCPSCS K+
Sbjct: 178 DDDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSLKK 237

Query: 248 AR 249
            R
Sbjct: 238 GR 239


>GSVIVT01015137001 assembled CDS
          Length = 101

 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 55/99 (55%), Gaps = 2/99 (2%)

Query: 126 MINDLPTIFEVVTGSVKKQAKDXXXXXXXXXXXXXXXXXXX-XXXXXFSK-GQPKXXXXX 183
           MINDLPTIFEVVTG+ KKQ K+                         +SK GQPK     
Sbjct: 1   MINDLPTIFEVVTGAAKKQVKEKSSVSNHSSNKSKSKSKVRGSESAKYSKVGQPKDEEEG 60

Query: 184 XXXXXXXXXXXTLCGACGENYAADEFWICCDICEKWFHG 222
                      TLCGACGENYA+DEFWICCDICEKWFHG
Sbjct: 61  LDEVDEEEHGDTLCGACGENYASDEFWICCDICEKWFHG 99


>GSVIVT01015123001 assembled CDS
          Length = 355

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/29 (79%), Positives = 26/29 (89%)

Query: 119 DRKRLFTMINDLPTIFEVVTGSVKKQAKD 147
           +RKRLF MINDLPTIFEVVTG+ KKQ K+
Sbjct: 286 ERKRLFNMINDLPTIFEVVTGAAKKQVKE 314