Jatropha Genome Database

JcCB0061781.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0061781.10 + phase: 0 /partial
         (178 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011054001 assembled CDS                                       272   7e-74
GSVIVT01017848001 assembled CDS                                       229   4e-61

>GSVIVT01011054001 assembled CDS
          Length = 397

 Score =  272 bits (695), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 127/144 (88%), Positives = 137/144 (95%)

Query: 1   ENWRMKQINAIIQSNDGPHILAGGLNSLDETDYSAERWTDIVKYYEEMGKPTPKVEVMRF 60
           ENWRMKQIN+IIQSN+GPHILAGGLNSLDETDYS+ERWTDIVKYYEEMGKPTPKVEVM+F
Sbjct: 226 ENWRMKQINSIIQSNEGPHILAGGLNSLDETDYSSERWTDIVKYYEEMGKPTPKVEVMKF 285

Query: 61  LKSKHYSDAKEFAGECESVVMIAKGQNVQGTCKYGTRVDYILASSNSPYKFVPGSYSVFS 120
           LKSK Y+DAK+FAGECESVVMIAKGQ+VQGTCKYGTRVDYILAS +SPYKFVPGSYSVFS
Sbjct: 286 LKSKQYTDAKDFAGECESVVMIAKGQSVQGTCKYGTRVDYILASPSSPYKFVPGSYSVFS 345

Query: 121 SKGTSDHHIVKVDMIKMNGGDQEN 144
           SKGTSDHHIVKVD+ K+    QEN
Sbjct: 346 SKGTSDHHIVKVDIAKVETIGQEN 369


>GSVIVT01017848001 assembled CDS
          Length = 408

 Score =  229 bits (585), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 114/148 (77%), Positives = 129/148 (87%)

Query: 1   ENWRMKQINAIIQSNDGPHILAGGLNSLDETDYSAERWTDIVKYYEEMGKPTPKVEVMRF 60
           ENWRMKQ NAIIQS+D PHILAGGLNSL+ +DYS ERW DI+KYYEE+GKPTPKV+VM F
Sbjct: 238 ENWRMKQTNAIIQSSDCPHILAGGLNSLNGSDYSRERWMDIIKYYEEIGKPTPKVDVMEF 297

Query: 61  LKSKHYSDAKEFAGECESVVMIAKGQNVQGTCKYGTRVDYILASSNSPYKFVPGSYSVFS 120
           LK K Y DAK FAGECE VV+IAKGQNVQGTCKYGTRVDYILAS +SPYKFVP SYSV S
Sbjct: 298 LKGKEYVDAKNFAGECEPVVIIAKGQNVQGTCKYGTRVDYILASQDSPYKFVPRSYSVIS 357

Query: 121 SKGTSDHHIVKVDMIKMNGGDQENVLTR 148
           SKGTSDHH+VKVD++K++   +EN + R
Sbjct: 358 SKGTSDHHVVKVDIVKVDENAEENFIRR 385