Jatropha Genome Database

JcCB0061481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0061481.10 - phase: 2 /partial
         (117 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018995001 assembled CDS                                       128   7e-31

>GSVIVT01018995001 assembled CDS
          Length = 688

 Score =  128 bits (321), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 65/111 (58%), Positives = 83/111 (74%), Gaps = 1/111 (0%)

Query: 1   FELIRQGLRDLAVSQSTLPKADPRIAKLAADGADAPLEELQEIISEVATNIHGSYVLKSS 60
           F+LI Q LRDLAVS+ST PK DPR    AA GADAP EEL  IIS+ AT +HG YV K+S
Sbjct: 557 FQLICQALRDLAVSKSTSPKVDPRTFVAAAYGADAPQEELHAIISKYATTVHGVYVWKTS 616

Query: 61  PDHPQYDVLRKVVIDLLLARGPNAKLKKSEVYEAAKLVLKRDINTTEYTKV 111
            +H +++ LRKVV+DL   + PNAKLK++++ EAAK+ LK++I T EY KV
Sbjct: 617 -EHSEHNPLRKVVVDLFCGKEPNAKLKRADIMEAAKIALKKEITTHEYNKV 666