Jatropha Genome Database

JcCB0061321.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0061321.20 + phase: 2 /TE/partial
         (413 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01034745001 assembled CDS                                       145   3e-35
GSVIVT01038695001 assembled CDS                                       123   2e-28
GSVIVT01037631001 assembled CDS                                       121   6e-28
GSVIVT01028612001 assembled CDS                                        67   2e-11

>GSVIVT01034745001 assembled CDS
          Length = 2196

 Score =  145 bits (367), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/260 (36%), Positives = 132/260 (50%), Gaps = 33/260 (12%)

Query: 160 FEAKISAIEESCKLQ------------AXEQRTSIRTEEAIEGAFQAFHTKYKGKAPSSL 207
           FEAKISAIEESC LQ            A EQR  +R +EA EGAFQA H   +GK   +L
Sbjct: 170 FEAKISAIEESCDLQTLTIVELTSKLHAQEQRVLMRGDEATEGAFQANH---EGKNSGNL 226

Query: 208 K------EKEVENKDFSGQKKFPPCGACEKTNHTEDRCWKN----LECNFYKKKVILRGF 257
           +        + + +  S + KFP C  C +TNH E  CW        CNF  K      +
Sbjct: 227 QGKKFFKNNKEKAEGSSRKGKFPSCSHCRRTNHAEKDCWHKGKPLFNCNFCNKLGHSEKY 286

Query: 258 ARQXXXXXXXXXXXXXIFLMTN------IKMKSICLLLLKFMSHQKKHIWNLASGCTNHM 311
            R                   +      + M S  L   +  SH+  + W + SGCT+HM
Sbjct: 287 CRAKKKQSQQQPKQNANVTEEDKNDDEHLFMASQALSSHELSSHEL-NTWLIDSGCTSHM 345

Query: 312 AKDECFFISLDRSVTTKVRMGNGEIIQVDGKSSVELQT-MKVXFLSNVLLVPNLDQNLLS 370
            K    F S+DRSV  KV++GNGE++Q  GK ++ + T  +   ++NVL +P+LDQNLLS
Sbjct: 346 TKYLSIFTSIDRSVQPKVKLGNGEVVQAKGKGTIAISTKRRTKIVTNVLYIPDLDQNLLS 405

Query: 371 IAQLVKEGYYMIFKSGSCVI 390
           +AQ+++ GY + FK   C I
Sbjct: 406 VAQMLRNGYAVFFKGNFCFI 425


>GSVIVT01038695001 assembled CDS
          Length = 740

 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 127/254 (50%), Gaps = 40/254 (15%)

Query: 160 FEAKISAIEES------------CKLQAXEQRTSIRTEEAIEGAFQAFHTKYKGKAPSSL 207
           +EA IS++E S              L+A EQR  +R  +  EGAFQA   K  G      
Sbjct: 59  YEAIISSLENSKDLSTISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMQKNAGH----- 113

Query: 208 KEKEVENKDFSGQKK----FPPCGACEKTNHTEDRCW--KNLECNFYKKKV----ILRGF 257
           K  +V NK   G  +    FPPC  C+KTNH+  +CW   +++CN   K+     I +  
Sbjct: 114 KNGKVNNKKSCGNNQKNGVFPPCPHCKKTNHSPQKCWWRPDVKCNKCGKQGNMERICKNQ 173

Query: 258 ARQXXXXXXXXXXXXXIFLMTNIKMKSICLLLLKFMSHQKKHIWNLASGCTNHMAKDECF 317
            ++             +F  T       C     F +      W + SGCTNHM  ++  
Sbjct: 174 QQEETSAAVDYCQEEQLFAAT-------C-----FANKSTSKSWLVDSGCTNHMTNNQDL 221

Query: 318 FISLDRSVTTKVRMGNGEIIQVDGKSSVELQTMK-VXFLSNVLLVPNLDQNLLSIAQLVK 376
           F  LDR+  +KVR+GNGE I V GK +V +++   +  + +VL VP++DQNLLS+ QLV+
Sbjct: 222 FRELDRTTISKVRIGNGEYIPVKGKGTVAIESQTGLKLIYDVLFVPDIDQNLLSVGQLVE 281

Query: 377 EGYYMIFKSGSCVI 390
           + + + F+  +C+I
Sbjct: 282 KEFKVYFEDRNCII 295


>GSVIVT01037631001 assembled CDS
          Length = 1940

 Score =  121 bits (303), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 126/254 (49%), Gaps = 40/254 (15%)

Query: 160  FEAKISAIEES------------CKLQAXEQRTSIRTEEAIEGAFQAFHTKYKGKAPSSL 207
            +EA IS++E S              L+A EQR  +R  +  EGAFQA   K  G      
Sbjct: 888  YEATISSLENSKDLSTISLTELLHSLEAVEQRRLMRQGDTAEGAFQARMQKNAGH----- 942

Query: 208  KEKEVENKDFSGQKK----FPPCGACEKTNHTEDRCW--KNLECNFYKKKV----ILRGF 257
            K  +V N    G  +    FPPC  C+KTNH+  +CW   +++CN   K+     I +  
Sbjct: 943  KNGKVNNNKSCGNNQKNGVFPPCPHCKKTNHSPKKCWWRPDVKCNKCGKQGHVERICKNQ 1002

Query: 258  ARQXXXXXXXXXXXXXIFLMTNIKMKSICLLLLKFMSHQKKHIWNLASGCTNHMAKDECF 317
             ++             +F  T       C     F +      W + SGCTNHM  ++  
Sbjct: 1003 QQEETNAVVDYCQEEQLFAAT-------C-----FANKSTSKSWLVDSGCTNHMTNNQDL 1050

Query: 318  FISLDRSVTTKVRMGNGEIIQVDGKSSVELQTMK-VXFLSNVLLVPNLDQNLLSIAQLVK 376
            F  LDR+  +KVR+GNGE I V GK +V +++   +  + +VL VP++DQNLLS+ QLV+
Sbjct: 1051 FRELDRTTISKVRIGNGEYIPVKGKGTVAIESQTGLKLIYDVLFVPDIDQNLLSVGQLVE 1110

Query: 377  EGYYMIFKSGSCVI 390
            + + + F+  +C+I
Sbjct: 1111 KEFKVYFEDRNCII 1124


>GSVIVT01028612001 assembled CDS
          Length = 3048

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 4/109 (3%)

Query: 287 LLLLKFMSHQK---KHIWNLASGCTNHMAKDECFFISLDRSVTTKVRMGNGEIIQVDGKS 343
           +LL+ ++   K   +  W L SGC+NHM   + +F   D +    V++GN   + V GK 
Sbjct: 303 MLLMAYVDLNKTSREDTWFLDSGCSNHMCGKKDYFSDFDGTFRDSVKLGNNTSMSVLGKG 362

Query: 344 SVELQTMKV-XFLSNVLLVPNLDQNLLSIAQLVKEGYYMIFKSGSCVIM 391
           +V L+  ++   ++ V  VP L  NLLSI QL ++G  ++F+ G C + 
Sbjct: 363 NVRLKVNEMTQIITGVFYVPELKNNLLSIGQLQEKGLTILFQHGKCKVF 411