Jatropha Genome Database

JcCB0061321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0061321.10 + phase: 0 /pseudo/partial
         (100 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01038617001 assembled CDS                                        62   7e-11
GSVIVT01033876001 assembled CDS                                        61   9e-11

>GSVIVT01038617001 assembled CDS
          Length = 128

 Score = 61.6 bits (148), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 43/62 (69%), Gaps = 3/62 (4%)

Query: 39  NLCLVLSLREGIVNHLSWLWLA-NIIKDKMICRKC-SRVHPWAVNCWKKKCGHSS*WRSK 96
            L LVL LR GI+   S + LA    +DKMICRKC +R+HP AVNC KKKCGHS+  R K
Sbjct: 66  TLHLVLRLRGGIIEP-SLMQLARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPK 124

Query: 97  RK 98
           +K
Sbjct: 125 KK 126


>GSVIVT01033876001 assembled CDS
          Length = 128

 Score = 61.2 bits (147), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 43/62 (69%), Gaps = 3/62 (4%)

Query: 39  NLCLVLSLREGIVNHLSWLWLA-NIIKDKMICRKC-SRVHPWAVNCWKKKCGHSS*WRSK 96
            L LVL LR GI+   S + LA    +DKMICRKC +R+HP AVNC KKKCGHS+  R K
Sbjct: 66  TLHLVLRLRGGIIEP-SLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPK 124

Query: 97  RK 98
           +K
Sbjct: 125 KK 126