Jatropha Genome Database

JcCB0060901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0060901.10 + phase: 0 /partial
         (290 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01003206001 assembled CDS                                       460   e-130
GSVIVT01003202001 assembled CDS                                       457   e-129

>GSVIVT01003206001 assembled CDS
          Length = 771

 Score =  460 bits (1183), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 225/290 (77%), Positives = 254/290 (87%)

Query: 1   MNASSCKVALSKDLRHMIVMCSGELNDNMVGSRENQMAGDVMHGSHGLVLDTSIFSKRKS 60
           +NAS CKVALSKDL H+IV CSGEL +  V SR+  + G  + G H LVLDTSIF KRK+
Sbjct: 219 LNASICKVALSKDLCHLIVTCSGELVEESVESRDRHIFGHGLLGLHSLVLDTSIFWKRKN 278

Query: 61  ELHQLAQQASNIEELTEVIRASLSVMSTQWSDAMRVFHEKFDSLSNLIVDHALDSSPQEE 120
           ELHQ+AQQASNIE+LTEVIRASLSVM  QWSDAM +FHEKFDSLS+LI+DH LDSSPQEE
Sbjct: 279 ELHQVAQQASNIEDLTEVIRASLSVMCKQWSDAMHMFHEKFDSLSSLIIDHGLDSSPQEE 338

Query: 121 FLSLLGGARTSPAVHQFLVNTLGEVGVKRVSKVVCGAGKELQRIVLDHIQPAAEIIAFRM 180
           FLSLL GARTSP +HQFLV++LGEVG+KRVSK V  AGKELQ IVLDH+QPAAEII FRM
Sbjct: 339 FLSLLCGARTSPPLHQFLVSSLGEVGLKRVSKAVSNAGKELQFIVLDHLQPAAEIIGFRM 398

Query: 181 GELRGLSRWRARYQGIGLDEMLINNATEKSGMMLVQIERFMRVLSSVEQQFSNFFNWLLK 240
           GELRGLSRWR RY+ IGLDE LI+NATEK+GM+LVQ+ERFM +LSS  QQFSNFF+WLLK
Sbjct: 399 GELRGLSRWRTRYKVIGLDERLIDNATEKAGMLLVQVERFMMILSSAVQQFSNFFSWLLK 458

Query: 241 CIKLLMQEPSDQLLPYNSELVVIFLKFLYDQDPVRQLLELSEVSHNIEVD 290
           CIKLLM E SDQLLP+NSELV+IFL+FLYDQDPVRQLLELSEV HNIE++
Sbjct: 459 CIKLLMSETSDQLLPFNSELVIIFLRFLYDQDPVRQLLELSEVDHNIEIE 508


>GSVIVT01003202001 assembled CDS
          Length = 592

 Score =  457 bits (1177), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 224/290 (77%), Positives = 254/290 (87%)

Query: 1   MNASSCKVALSKDLRHMIVMCSGELNDNMVGSRENQMAGDVMHGSHGLVLDTSIFSKRKS 60
           +NAS CKVALSKDL H+IV CSGEL +  V SR+  + G  + G H LVL+TSIF KRK+
Sbjct: 146 LNASICKVALSKDLCHLIVTCSGELVEQSVESRDRHIFGHGLLGLHSLVLNTSIFWKRKN 205

Query: 61  ELHQLAQQASNIEELTEVIRASLSVMSTQWSDAMRVFHEKFDSLSNLIVDHALDSSPQEE 120
           ELHQ+AQQASNIE+LTEVIRASLSVM  QWSDAM +FHEKFDSLS+LI+DH LDSSPQEE
Sbjct: 206 ELHQVAQQASNIEDLTEVIRASLSVMCKQWSDAMHMFHEKFDSLSSLIIDHGLDSSPQEE 265

Query: 121 FLSLLGGARTSPAVHQFLVNTLGEVGVKRVSKVVCGAGKELQRIVLDHIQPAAEIIAFRM 180
           FLSLL GARTSP +HQFLV++LGEVG+KRVSK V  AGKELQ IVLDH+QPAAEII FRM
Sbjct: 266 FLSLLCGARTSPPLHQFLVSSLGEVGLKRVSKAVSNAGKELQLIVLDHLQPAAEIIGFRM 325

Query: 181 GELRGLSRWRARYQGIGLDEMLINNATEKSGMMLVQIERFMRVLSSVEQQFSNFFNWLLK 240
           GELRGLSRWR RY+ IGLDE LI+NATEK+GM+LVQ+ERFM +LSS  QQFSNFF+WLLK
Sbjct: 326 GELRGLSRWRTRYKVIGLDERLIDNATEKAGMLLVQVERFMMILSSAVQQFSNFFSWLLK 385

Query: 241 CIKLLMQEPSDQLLPYNSELVVIFLKFLYDQDPVRQLLELSEVSHNIEVD 290
           CIKLLM E SDQLLP+NSELV+IFL+FLYDQDPVRQLLELSEV HNIE++
Sbjct: 386 CIKLLMSETSDQLLPFNSELVIIFLRFLYDQDPVRQLLELSEVDHNIEIE 435