Jatropha Genome Database

JcCB0060791.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0060791.20 - phase: 2 /pseudo/partial
         (94 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031807001 assembled CDS                                       118   7e-28

>GSVIVT01031807001 assembled CDS
          Length = 232

 Score =  118 bits (295), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 55/85 (64%), Positives = 66/85 (77%), Gaps = 3/85 (3%)

Query: 7   IHMHHLMKDAEVPWHLIAIAIFFTLIKLPGPCYPYWGRIFVPHIANGVLWRTLWSAFLWF 66
           + +  ++KDAEV WHLIAIAIFFTL+KLPGP YPYWGRIF+PH ANG L RTLWS FLW+
Sbjct: 150 LELSPVLKDAEVAWHLIAIAIFFTLLKLPGPYYPYWGRIFIPHFANGGLLRTLWSVFLWY 209

Query: 67  RRPRKGSGAVLQQNSADSSNSETNT 91
           RRPR+    +LQ+ S + S S  NT
Sbjct: 210 RRPRE---TLLQRKSLNGSGSVPNT 231