Jatropha Genome Database

JcCB0060791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0060791.10 - phase: 0 /partial
         (222 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035354001 assembled CDS                                       206   6e-54
GSVIVT01036378001 assembled CDS                                       168   2e-42
GSVIVT01011439001 assembled CDS                                        62   2e-10
GSVIVT01016165001 assembled CDS                                        62   3e-10
GSVIVT01012514001 assembled CDS                                        51   4e-07
GSVIVT01033508001 assembled CDS                                        48   5e-06
GSVIVT01009261001 assembled CDS                                        47   5e-06
GSVIVT01025360001 assembled CDS                                        47   9e-06

>GSVIVT01035354001 assembled CDS
          Length = 479

 Score =  206 bits (524), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 112/209 (53%), Positives = 142/209 (67%), Gaps = 11/209 (5%)

Query: 22  DAFELAKQRAQEIASRI---ANDADQKRPRLVXXXXXX------XXXXXXXXXXXXXXXX 72
           D  +LAKQRAQEIA+R+   A++ + KRPR+                             
Sbjct: 62  DEIQLAKQRAQEIAARLFSNASNTEAKRPRVENGAGAGGFDSGDKGFSSAPSDVGQKPMI 121

Query: 73  XXXXXXXLYHGSQGISKKITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHS 132
                  + +G QG SKKI IPNG+VGV+IG+GGETIKY+Q+QSGAKIQ+T+D DADP+S
Sbjct: 122 STPSAIPVSYGYQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNS 181

Query: 133 LTRDVELMGSSDQISRAEELINDVIAETDAGGSASSAVHGLDTKQTGGEQFAMKVPNDKV 192
            TR VELMG+ DQI++AE+LINDV++E +AGGS    V    T Q G EQF MKVPN+KV
Sbjct: 182 PTRLVELMGTPDQIAKAEQLINDVLSEAEAGGSG--IVSRRLTGQAGSEQFVMKVPNNKV 239

Query: 193 GLLIGKSGDTIKYMQNRSGARMQIIPLHL 221
           GL+IGK G+TIK MQ R+GAR+Q+IPLHL
Sbjct: 240 GLIIGKGGETIKNMQARTGARIQVIPLHL 268



 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 52/71 (73%), Gaps = 3/71 (4%)

Query: 91  ITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQ--DADPHSLTRDVELMGSSDQISR 148
           + +PN KVG++IG+GGETIK +Q ++GA+IQ+        D  S+ R V++ G+S+QI  
Sbjct: 232 MKVPNNKVGLIIGKGGETIKNMQARTGARIQVIPLHLPPGD-TSMERTVQIDGTSEQIES 290

Query: 149 AEELINDVIAE 159
           A++L+N+VI+E
Sbjct: 291 AKQLVNEVISE 301


>GSVIVT01036378001 assembled CDS
          Length = 390

 Score =  168 bits (425), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 109/140 (77%), Gaps = 2/140 (1%)

Query: 84  SQGISKKITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSLTRDVELMGSS 143
           +Q +S+K+ +PN KVGV+IG+ G+TI+++Q  SGAKIQIT+D DADP+S +R VEL+GS 
Sbjct: 173 TQTMSRKMEVPNNKVGVLIGKAGDTIRFLQYNSGAKIQITRDADADPYSASRPVELIGSL 232

Query: 144 DQISRAEELINDVIAETDAGGSASSAVHGLDTKQTGG--EQFAMKVPNDKVGLLIGKSGD 201
           + I++AE+LI DVIAE DAGGS S    G  T Q  G  EQ  ++VPN+KVGL+IGK G+
Sbjct: 233 ENINKAEKLIKDVIAEADAGGSPSLVARGFATAQAVGAAEQVQIQVPNEKVGLIIGKGGE 292

Query: 202 TIKYMQNRSGARMQIIPLHL 221
           TIK +Q RSGAR+Q+IP HL
Sbjct: 293 TIKSLQTRSGARIQLIPQHL 312



 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 40/60 (66%)

Query: 157 IAETDAGGSASSAVHGLDTKQTGGEQFAMKVPNDKVGLLIGKSGDTIKYMQNRSGARMQI 216
           I + + G   S+ V    T +T      M+VPN+KVG+LIGK+GDTI+++Q  SGA++QI
Sbjct: 152 IPQQEVGDVPSAEVQQQPTSETQTMSRKMEVPNNKVGVLIGKAGDTIRFLQYNSGAKIQI 211


>GSVIVT01011439001 assembled CDS
          Length = 548

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 72/133 (54%), Gaps = 8/133 (6%)

Query: 90  KITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSLTRDVELMGSSDQISRA 149
           +   P  K+G +IGRGGE +K ++V + +KI+I    +  P    R V +  SSD+ +  
Sbjct: 46  RYLCPGRKIGSIIGRGGEIVKQLRVDTKSKIRIG---ETVPGCEERVVTIYSSSDETNAF 102

Query: 150 EELINDVIAETDA-----GGSASSAVHGLDTKQTGGEQFAMKVPNDKVGLLIGKSGDTIK 204
           ++    V    DA         S  VHG D+++       + VP+D++G +IGK G  I+
Sbjct: 103 DDSDTFVSPAQDALFRVHDRVVSEEVHGEDSEEASQVTVRLLVPSDQIGCVIGKGGQIIQ 162

Query: 205 YMQNRSGARMQII 217
            +++ SGA+++I+
Sbjct: 163 SIRSESGAQVRIL 175


>GSVIVT01016165001 assembled CDS
          Length = 357

 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 10/130 (7%)

Query: 90  KITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSLTRDVELMGSSDQISRA 149
           +  + N   G VIG+GG TI   Q QSGA+IQ++++ +  P +  R + + G++++I +A
Sbjct: 85  RFLVSNAAAGSVIGKGGSTINDFQSQSGARIQLSRNHEFFPGTSDRIIMISGATNEIIKA 144

Query: 150 EELINDVIAETDAGGSASSAVHGLDTKQTGG-EQFAMKVPNDKVGLLIGKSGDTIKYMQN 208
            ELI   +          S +H  D  +     +  + VPN   G +IGK G TIK    
Sbjct: 145 MELILAKLL---------SEMHTEDGDEADPRSKVRLIVPNSSCGGIIGKGGSTIKSFIE 195

Query: 209 RSGARMQIIP 218
            S A ++I P
Sbjct: 196 DSQASIKISP 205



 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 21/147 (14%)

Query: 90  KITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSLT-RDVELMGSSDQISR 148
           ++ +PN   G +IG+GG TIK     S A I+I+  QD +   LT R V LMGS ++  R
Sbjct: 171 RLIVPNSSCGGIIGKGGSTIKSFIEDSQASIKISP-QDNNYLGLTDRLVTLMGSLEEQMR 229

Query: 149 AEELINDVIAE-------TDAGGSASSAVHGLDTKQTG-GEQF-----------AMKVPN 189
           A +LI   + E        +A  S ++A + ++    G G +F            + V +
Sbjct: 230 AIDLILSKLTEDPHYTQFMNAPFSYAAAYNSMNYGPNGAGGKFQNNKEDRSNSVTIGVAD 289

Query: 190 DKVGLLIGKSGDTIKYMQNRSGARMQI 216
           + +GL++G+ G  I  +   SGAR++I
Sbjct: 290 EHIGLVVGRGGRNIMDISQASGARIKI 316


>GSVIVT01012514001 assembled CDS
          Length = 585

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 7/135 (5%)

Query: 85  QGISKKITIPNGKVGVVIGRGGETIKYIQVQSGAKIQI-TKDQDADPHSLTRDVELMGSS 143
           Q +  KI   N +VG VIG+GG  +K +Q ++GA I +     + D     R + +  S 
Sbjct: 234 QEVIFKILCSNDRVGGVIGKGGTIVKALQNEAGASISVGAPVAECD----ERLITITASE 289

Query: 144 DQISRAEELINDVIAETDAGGSASSAVHGLDTKQTGGEQFA-MKVPNDKVGLLIGKSGDT 202
           +  SR     N VI   +    A     GLD+   G    A + VP+++VG L+GK G  
Sbjct: 290 NPESRYSPAQNGVILVFNRSIEAGIE-KGLDSGSKGSPVSARLVVPSNQVGCLMGKGGTI 348

Query: 203 IKYMQNRSGARMQII 217
           I  M+  SGA ++II
Sbjct: 349 ISEMRKASGAGIRII 363


>GSVIVT01033508001 assembled CDS
          Length = 239

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 88  SKKITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSLTRDVELMGSSDQIS 147
           + KI++     G +IG+GG   K I  Q+GAK+ I ++ D+DP+   R++EL G+ +QI 
Sbjct: 113 TAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSI-REHDSDPN--LRNIELEGTFEQIK 169

Query: 148 RAEELINDVIAETDA 162
            A  ++ ++I    A
Sbjct: 170 EASAMVRELIVNISA 184


>GSVIVT01009261001 assembled CDS
          Length = 672

 Score = 47.4 bits (111), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 26/149 (17%)

Query: 90  KITIPNGKVGVVIGRGGETIKYIQVQSGAKIQIT-----------------KDQDAD-PH 131
           ++  P  K G VIG+GG  I  I+ ++G K+++                  KD +AD   
Sbjct: 48  RVLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDERVVLITGSDKDTEADNEQ 107

Query: 132 SLTRDVELMGSSDQISRAEELINDVIAETDAGGSASSAVHGLDTKQTGGEQFAMK--VPN 189
           S   D ++      + +A  L+ + +AE +      S  +G D        F ++  V +
Sbjct: 108 SKEDDSQVEKGISSVQKALLLVFERMAEGE------SETNGGDEDSNKSPTFVVRLLVLS 161

Query: 190 DKVGLLIGKSGDTIKYMQNRSGARMQIIP 218
            +VG L+GK G  IK M   SGA+++I+P
Sbjct: 162 SQVGCLLGKGGSVIKQMSAESGAQIRILP 190


>GSVIVT01025360001 assembled CDS
          Length = 244

 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 3/68 (4%)

Query: 90  KITIPNGKVGVVIGRGGETIKYIQVQSGAKIQITKDQDADPHSLTRDVELMGSSDQISRA 149
           KI++     G +IG+ G   K I   +GAK+ I KD D+DP+   R++EL G+ DQI +A
Sbjct: 121 KISVDASLAGAIIGKSGVNSKQICRLTGAKLSI-KDHDSDPN--LRNIELEGTFDQIKQA 177

Query: 150 EELINDVI 157
             ++ ++I
Sbjct: 178 SAMVRELI 185