Jatropha Genome Database

JcCB0060481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0060481.10 + phase: 0 /partial
         (358 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022530001 assembled CDS                                       543   e-155
GSVIVT01029753001 assembled CDS                                       525   e-150

>GSVIVT01022530001 assembled CDS
          Length = 424

 Score =  543 bits (1398), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 259/358 (72%), Positives = 297/358 (82%), Gaps = 1/358 (0%)

Query: 1   MDRLDGPASLMIVSDLDFTMVDHRDPENLSLLRFNALWEAYYRQHSLLVFSTGRSPTIYK 60
           MDRL+ PA LMIVSDLD TMVDH D ENLSLLRFNALWEA YR  SLLVFSTGRSPT+YK
Sbjct: 1   MDRLNNPARLMIVSDLDHTMVDHHDSENLSLLRFNALWEANYRHDSLLVFSTGRSPTLYK 60

Query: 61  QLRNEKPLLTPDITITSVGTEIMYGESMVRDNGWEQYLNQQWNREIVTEETAKFPELTPQ 120
           QLR EKP+LTPDITI SVGTEI YG SMV DNGW Q+LNQ+W++ IV EET KFPEL  Q
Sbjct: 61  QLRKEKPMLTPDITIMSVGTEITYGNSMVPDNGWVQFLNQKWDKNIVMEETRKFPELKLQ 120

Query: 121 ADTEQRPHKVSFFVDKVKALKIVKTLSELLEKRGLDVKVIYSNGTALDVLPKRAGKGQAL 180
           ++TEQRPHKVSF+VDK KA  +++ LSELLEKRGLDVK+IYS G  LD+LP+ AGKGQAL
Sbjct: 121 SETEQRPHKVSFYVDKDKARDVMRALSELLEKRGLDVKIIYSGGMDLDILPQGAGKGQAL 180

Query: 181 LYLFKKFEANGKMPVNTLVCGDSGNDAELFNINEVYGVMVSNAQEELLQWYAENAKNNPN 240
            YL KKF+A GK+P NTLVCGDSGNDAELF+I +VYGVMVSNAQEELLQW+AENAKNNP 
Sbjct: 181 AYLLKKFKAEGKLPNNTLVCGDSGNDAELFSIPDVYGVMVSNAQEELLQWHAENAKNNPK 240

Query: 241 IIHATERCAAGIIQALGGFRLGPNVSPRDIRDFQKCKVEIFSPGHEVVKFYLSYERWRRA 300
           IIHATERCA+GIIQA+G F LGPN SPRD++   +CK+E  +PGHE+VKFYL YERWRRA
Sbjct: 241 IIHATERCASGIIQAIGQFSLGPNTSPRDLKCSSECKMEDTNPGHEIVKFYLFYERWRRA 300

Query: 301 EIEKYNDYLQNLKLVFFPSGTFVHPSGMEQSVQYCIDAMTRLYGDKQGKQYRVWVDLV 358
           E+E  +  L+ LK V +PSG F+HPSG+E+ +  CI AM   YGDK+ K  RVWVD V
Sbjct: 301 EVENSDQSLEKLKAVCYPSGVFIHPSGVERPLHDCISAMKNCYGDKR-KSLRVWVDRV 357


>GSVIVT01029753001 assembled CDS
          Length = 425

 Score =  525 bits (1353), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 246/349 (70%), Positives = 289/349 (82%)

Query: 10  LMIVSDLDFTMVDHRDPENLSLLRFNALWEAYYRQHSLLVFSTGRSPTIYKQLRNEKPLL 69
           LM+VSDLD TMVDH D EN SLLRFNALWEA YR +SLLVFSTGRSP IYKQLR EKPLL
Sbjct: 10  LMVVSDLDLTMVDHYDSENHSLLRFNALWEANYRHNSLLVFSTGRSPAIYKQLRKEKPLL 69

Query: 70  TPDITITSVGTEIMYGESMVRDNGWEQYLNQQWNREIVTEETAKFPELTPQADTEQRPHK 129
           +PDIT+ SVGTEI YGESMV DN W ++LNQ W+R +V EET KFPEL PQ++TEQRPHK
Sbjct: 70  SPDITVMSVGTEIAYGESMVPDNDWVEFLNQNWDRNMVIEETRKFPELIPQSETEQRPHK 129

Query: 130 VSFFVDKVKALKIVKTLSELLEKRGLDVKVIYSNGTALDVLPKRAGKGQALLYLFKKFEA 189
           VSF+++K KA +++K LSE LEK GLD K+IYS G ALDVLP  AGKGQAL YL K+ + 
Sbjct: 130 VSFYIEKDKAGEVIKALSESLEKNGLDFKIIYSGGIALDVLPHGAGKGQALAYLLKRLKT 189

Query: 190 NGKMPVNTLVCGDSGNDAELFNINEVYGVMVSNAQEELLQWYAENAKNNPNIIHATERCA 249
            GK+P NTL CGDSGNDAELF++ EVYGVMVSNAQEELLQWYAENAKNNPNIIHATERCA
Sbjct: 190 EGKVPDNTLACGDSGNDAELFSVPEVYGVMVSNAQEELLQWYAENAKNNPNIIHATERCA 249

Query: 250 AGIIQALGGFRLGPNVSPRDIRDFQKCKVEIFSPGHEVVKFYLSYERWRRAEIEKYNDYL 309
           AGIIQA+G F LGPN SPRD+  F +CK +  +PGHE+VKFYL YERWR AE+E  +  +
Sbjct: 250 AGIIQAIGHFSLGPNTSPRDVPHFSECKPDNVNPGHEIVKFYLFYERWRCAEVEDTDPCM 309

Query: 310 QNLKLVFFPSGTFVHPSGMEQSVQYCIDAMTRLYGDKQGKQYRVWVDLV 358
           +NLK+ + P+G FVHPSG+E+S+  CI+AM   YGDKQG++++VWVD V
Sbjct: 310 ENLKVDYHPAGVFVHPSGVERSLHDCINAMRSCYGDKQGRKFQVWVDRV 358