Jatropha Genome Database

JcCB0060211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0060211.10 + phase: 0 /partial
         (329 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035662001 assembled CDS                                       504   e-143
GSVIVT01015367001 assembled CDS                                       503   e-143
GSVIVT01035914001 assembled CDS                                       337   6e-93
GSVIVT01030218001 assembled CDS                                       306   1e-83
GSVIVT01020739001 assembled CDS                                       303   6e-83
GSVIVT01017971001 assembled CDS                                        75   3e-14

>GSVIVT01035662001 assembled CDS
          Length = 422

 Score =  504 bits (1297), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 226/315 (71%), Positives = 273/315 (86%)

Query: 15  SPAITENRVTTVQCVAGTGALRIGAEFLAKHYHQNIVYLPQPTYGNHPNFFLAVGHTLKT 74
           SPAI   RVTTVQC++GTG+LR+GAEFLA+H+HQ  +Y+PQPT+GNH   F   G ++KT
Sbjct: 108 SPAIQVKRVTTVQCLSGTGSLRVGAEFLARHHHQRTIYIPQPTWGNHGKIFTLAGLSVKT 167

Query: 75  YRYYDPATHGLDFQGLLEDLSSAPSGAIVLLQACGHNPTGVDPTLEQWEHIRQLMRLKGL 134
           YRYYDPAT GL+FQGLLEDLS APSGAIVLL AC HNPTGVDPTL+QWE IRQL+RLKGL
Sbjct: 168 YRYYDPATRGLNFQGLLEDLSLAPSGAIVLLHACAHNPTGVDPTLQQWEQIRQLIRLKGL 227

Query: 135 LPFFDCAYQGFVSGNLDMDAQSIRVFVADGGECLVAQSYSKIMGIYADRVGALSIVCKTA 194
           LPFFD AYQGF SG+LD DAQS+R+FVADGGECL AQSY+K MG+Y +RVGALSIVCKTA
Sbjct: 228 LPFFDSAYQGFASGSLDADAQSVRMFVADGGECLAAQSYAKNMGLYGERVGALSIVCKTA 287

Query: 195 DVASRVNSQLKLVIRPSYSNPPIHGAAVVATILNDREMVTEWTVELKAMTNRIINLRRQL 254
           DVASRV SQ+KLVIRP +SNPPIHGA++VA IL +R+M  EWTVELKAM +RII++R+QL
Sbjct: 288 DVASRVESQVKLVIRPMFSNPPIHGASIVAIILKNRDMYNEWTVELKAMADRIISMRQQL 347

Query: 255 FDALCDKGTPGDWSHVTRQVGMYAFSGLNDEQVAFIMKDYHIYMSPDGRINMTGLSTKTI 314
           FDAL  +GTPGDW+H+ +Q+GM+ F+GLN  QVAF+ K+YH+YM+ DGRI+M GLS+KT+
Sbjct: 348 FDALRARGTPGDWNHILKQIGMFTFTGLNTAQVAFMTKEYHVYMTSDGRISMAGLSSKTV 407

Query: 315 PYFVEAIHAAVTRTL 329
           P+  +AIHAAVTR +
Sbjct: 408 PHLADAIHAAVTRAI 422


>GSVIVT01015367001 assembled CDS
          Length = 411

 Score =  503 bits (1296), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 227/313 (72%), Positives = 270/313 (86%)

Query: 15  SPAITENRVTTVQCVAGTGALRIGAEFLAKHYHQNIVYLPQPTYGNHPNFFLAVGHTLKT 74
           SPAI ENRV TVQ ++GTG+LRIGAEFLA+HY+Q+ +Y+P PT+GNHP  F   G ++KT
Sbjct: 97  SPAIQENRVATVQGLSGTGSLRIGAEFLARHYYQHTIYIPVPTWGNHPKIFTIAGLSVKT 156

Query: 75  YRYYDPATHGLDFQGLLEDLSSAPSGAIVLLQACGHNPTGVDPTLEQWEHIRQLMRLKGL 134
           YRYYDP T GLDF+GLLEDL +AP+GAIVLL AC HNPTGVDPTLEQWE IRQLMR KGL
Sbjct: 157 YRYYDPETRGLDFKGLLEDLGAAPTGAIVLLHACAHNPTGVDPTLEQWEQIRQLMRSKGL 216

Query: 135 LPFFDCAYQGFVSGNLDMDAQSIRVFVADGGECLVAQSYSKIMGIYADRVGALSIVCKTA 194
           LPFFD AYQGF SG+LD DAQS+R+FVADGGECL AQSY+K MG+Y +RVGALSIVCK A
Sbjct: 217 LPFFDSAYQGFASGSLDADAQSVRMFVADGGECLAAQSYAKNMGLYGERVGALSIVCKAA 276

Query: 195 DVASRVNSQLKLVIRPSYSNPPIHGAAVVATILNDREMVTEWTVELKAMTNRIINLRRQL 254
           DVASRV SQLKLVIRP YSNPPIHGA++VATIL D +M  EWT+ELKAM +RII++R+ L
Sbjct: 277 DVASRVESQLKLVIRPMYSNPPIHGASIVATILKDSDMYNEWTLELKAMADRIISMRQLL 336

Query: 255 FDALCDKGTPGDWSHVTRQVGMYAFSGLNDEQVAFIMKDYHIYMSPDGRINMTGLSTKTI 314
           FD L D+GTPGDWSH+ +Q+GM+ F+GLN EQVAF+ K+YHIYM+ DGRI+M GLS++T+
Sbjct: 337 FDTLRDRGTPGDWSHIIKQIGMFTFTGLNTEQVAFMTKEYHIYMTSDGRISMAGLSSRTV 396

Query: 315 PYFVEAIHAAVTR 327
           P+  +AIHAAVTR
Sbjct: 397 PHLADAIHAAVTR 409


>GSVIVT01035914001 assembled CDS
          Length = 462

 Score =  337 bits (863), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 152/308 (49%), Positives = 211/308 (68%), Gaps = 1/308 (0%)

Query: 15  SPAITENRVTTVQCVAGTGALRIGAEFLAKHYHQNIVYLPQPTYGNHPNFFLAVGHTLKT 74
           +P I + RV TVQ ++GTG+LR+ A  + +++    V +  PT+GNH N F         
Sbjct: 147 NPVIEQQRVATVQGLSGTGSLRLAAALIERYFPGAKVLISSPTWGNHKNIFNDARVPWSE 206

Query: 75  YRYYDPATHGLDFQGLLEDLSSAPSGAIVLLQACGHNPTGVDPTLEQWEHIRQLMRLKGL 134
           YRYYDP T GLDF G++ D+ +AP G+ VLL  C HNPTG+DPT EQWE I  +++ K  
Sbjct: 207 YRYYDPKTVGLDFDGMISDIKAAPEGSFVLLHGCAHNPTGIDPTPEQWEKIADVIQEKNH 266

Query: 135 LPFFDCAYQGFVSGNLDMDAQSIRVFVADGGECLVAQSYSKIMGIYADRVGALSIVCKTA 194
           +PFFD AYQGF SG+LD DA S+R+F A G E LVAQSYSK +G+YA+R+GA+++VC +A
Sbjct: 267 IPFFDVAYQGFASGSLDADASSVRLFAARGMELLVAQSYSKNLGLYAERIGAINVVCSSA 326

Query: 195 DVASRVNSQLKLVIRPSYSNPPIHGAAVVATILNDREMVTEWTVELKAMTNRIINLRRQL 254
           D A+RV SQLK + RP YSNPPIHGA +VA ++ D  +  EW  E++ M  RI N+R++L
Sbjct: 327 DAAARVKSQLKRIARPMYSNPPIHGARIVANVVGDPALFNEWKEEMELMAGRIKNVRQKL 386

Query: 255 FDALCDKGTPG-DWSHVTRQVGMYAFSGLNDEQVAFIMKDYHIYMSPDGRINMTGLSTKT 313
           FD+L  K   G DWS + +Q+GM++F+GL+  Q   +   +H+YM+ DGRI++ GLS   
Sbjct: 387 FDSLSAKDKCGKDWSFILKQIGMFSFTGLSKVQSENMTNKWHVYMTKDGRISLAGLSLAK 446

Query: 314 IPYFVEAI 321
             Y  +AI
Sbjct: 447 CEYLADAI 454


>GSVIVT01030218001 assembled CDS
          Length = 427

 Score =  306 bits (783), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 144/305 (47%), Positives = 199/305 (65%)

Query: 18  ITENRVTTVQCVAGTGALRIGAEFLAKHYHQNIVYLPQPTYGNHPNFFLAVGHTLKTYRY 77
           I E R   VQ ++GTGA R+ AEF  + Y Q+ +YLP PT+ NH N +       +T+ Y
Sbjct: 117 IKEGRFAGVQALSGTGACRLFAEFQRRFYPQSRIYLPIPTWSNHHNIWRDAQVPGRTFHY 176

Query: 78  YDPATHGLDFQGLLEDLSSAPSGAIVLLQACGHNPTGVDPTLEQWEHIRQLMRLKGLLPF 137
           Y P + GL F  L++D+ +AP  +  LL  C HNPTGVDPT EQW  I  L ++K   PF
Sbjct: 177 YHPDSKGLHFAALMDDIKNAPDRSFFLLHPCAHNPTGVDPTEEQWREISNLFKVKNHFPF 236

Query: 138 FDCAYQGFVSGNLDMDAQSIRVFVADGGECLVAQSYSKIMGIYADRVGALSIVCKTADVA 197
           FD AYQGF SG+LD DA++IR+F+ DG     AQS++K MG+Y  RVG LS++C  A  A
Sbjct: 237 FDMAYQGFASGDLDKDAKAIRIFLEDGHLIGCAQSFAKNMGLYGHRVGCLSVLCVDAKQA 296

Query: 198 SRVNSQLKLVIRPSYSNPPIHGAAVVATILNDREMVTEWTVELKAMTNRIINLRRQLFDA 257
             + SQL+ + R  YS+PP+HG  +V+TIL+D  +   W  ELK M NRI  +R  L ++
Sbjct: 297 VAIKSQLQHITRAMYSSPPVHGILLVSTILSDPHLKELWKKELKVMANRIHRMRSTLHES 356

Query: 258 LCDKGTPGDWSHVTRQVGMYAFSGLNDEQVAFIMKDYHIYMSPDGRINMTGLSTKTIPYF 317
           L   G+P +W H+T QVGM+ FSGL+ +QV  ++K++HIYM+ DGRI+M G++T  + Y 
Sbjct: 357 LKKLGSPLNWDHMTNQVGMFCFSGLSPDQVNRLVKEFHIYMTYDGRISMAGVTTSNVSYL 416

Query: 318 VEAIH 322
             AIH
Sbjct: 417 ANAIH 421


>GSVIVT01020739001 assembled CDS
          Length = 423

 Score =  303 bits (777), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 140/309 (45%), Positives = 201/309 (65%)

Query: 14  SSPAITENRVTTVQCVAGTGALRIGAEFLAKHYHQNIVYLPQPTYGNHPNFFLAVGHTLK 73
           +S  I + R+  VQ ++GTGA R+ A+F  +    + +Y+P PT+ NH N +       +
Sbjct: 109 NSEFIKDKRIAAVQALSGTGACRLFADFQKRFRPDSQIYIPVPTWANHHNIWRDAQVPQR 168

Query: 74  TYRYYDPATHGLDFQGLLEDLSSAPSGAIVLLQACGHNPTGVDPTLEQWEHIRQLMRLKG 133
           T+ YY P T GLDF  L++D+ +AP+G+  LL AC HNPTGVDP+ EQW+ I    ++KG
Sbjct: 169 TFHYYHPETKGLDFASLMDDVKNAPNGSFFLLHACAHNPTGVDPSEEQWKEISYQFKVKG 228

Query: 134 LLPFFDCAYQGFVSGNLDMDAQSIRVFVADGGECLVAQSYSKIMGIYADRVGALSIVCKT 193
              FFD AYQGF SG+ + DA+SI++F+ DG    +AQSY+K MG+Y  RVG LS++C+ 
Sbjct: 229 HFAFFDMAYQGFASGDPERDAKSIKIFLEDGHLIGIAQSYAKNMGLYGQRVGCLSLLCED 288

Query: 194 ADVASRVNSQLKLVIRPSYSNPPIHGAAVVATILNDREMVTEWTVELKAMTNRIINLRRQ 253
              A  V SQL+ + RP YSNPP+ GA +V+TIL D E+   W  E+K M +RII +R  
Sbjct: 289 EKQAVAVKSQLQQIARPMYSNPPVQGALIVSTILGDPELKKLWLKEVKVMADRIIGMRTA 348

Query: 254 LFDALCDKGTPGDWSHVTRQVGMYAFSGLNDEQVAFIMKDYHIYMSPDGRINMTGLSTKT 313
           L + L   G+P  W H+T Q+GM+ +SGL  EQV  +  ++HIYM+ +GRI+M G++T  
Sbjct: 349 LRENLEKLGSPLSWEHITNQIGMFCYSGLTPEQVDRMTNEFHIYMTRNGRISMAGITTGN 408

Query: 314 IPYFVEAIH 322
           + Y   AIH
Sbjct: 409 VSYLANAIH 417


>GSVIVT01017971001 assembled CDS
          Length = 110

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 37/44 (84%)

Query: 92  EDLSSAPSGAIVLLQACGHNPTGVDPTLEQWEHIRQLMRLKGLL 135
            DLS AP+GAIVLL+ C HNPTGVDPTLEQWE I QLM LKG++
Sbjct: 37  SDLSVAPAGAIVLLRTCAHNPTGVDPTLEQWEQIIQLMSLKGMV 80