Jatropha Genome Database

JcCB0060001.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0060001.20 - phase: 0 
         (230 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011589001 assembled CDS                                       165   2e-41
GSVIVT01009845001 assembled CDS                                       149   9e-37
GSVIVT01024162001 assembled CDS                                       148   2e-36

>GSVIVT01011589001 assembled CDS
          Length = 308

 Score =  165 bits (417), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 71/111 (63%), Positives = 92/111 (82%)

Query: 120 KRNLDVDIDIRNFDFSGVPSPFCSCTGMHRVCYKWGAGGWQSSCCTTNISEYPLPMSSTR 179
           K+N+DV I+  + D SG+P P CSCTG  + CY+WG GGWQS+CCTT+IS YPLPMS+ R
Sbjct: 164 KKNMDVVINGIDMDISGIPIPVCSCTGNPQQCYRWGCGGWQSACCTTSISMYPLPMSTKR 223

Query: 180 AGARMAGRKMSNGAYLKLLLRLAAEGYDLSHPVDLKNHWARHGTNKFVTIK 230
            GAR+AGRKMS GA+ K+L +LAAEGY+ ++P+DL+ HWA+HGTNKFVTI+
Sbjct: 224 RGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRRHWAKHGTNKFVTIR 274


>GSVIVT01009845001 assembled CDS
          Length = 146

 Score =  149 bits (377), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 67/107 (62%), Positives = 83/107 (77%)

Query: 124 DVDIDIRNFDFSGVPSPFCSCTGMHRVCYKWGAGGWQSSCCTTNISEYPLPMSSTRAGAR 183
           D+ ++   FD S +P+P CSCTG+ R CYKWG GGWQSSCCTT +S YPLP    +  AR
Sbjct: 40  DLGLNQVTFDESTMPAPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPAVPNKRHAR 99

Query: 184 MAGRKMSNGAYLKLLLRLAAEGYDLSHPVDLKNHWARHGTNKFVTIK 230
           + GRKMS  A+ KLL RLAAEG+DLS PVDLK+HWA+HGTN+++TIK
Sbjct: 100 VGGRKMSGSAFNKLLSRLAAEGHDLSIPVDLKDHWAKHGTNRYITIK 146


>GSVIVT01024162001 assembled CDS
          Length = 248

 Score =  148 bits (374), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 81/107 (75%)

Query: 124 DVDIDIRNFDFSGVPSPFCSCTGMHRVCYKWGAGGWQSSCCTTNISEYPLPMSSTRAGAR 183
           D+ +++  FD S +P P CSCTG+ R CYKWG GGWQSSCCTT +S YPLP    +  AR
Sbjct: 142 DLGLNLVTFDESTMPVPVCSCTGVPRQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHAR 201

Query: 184 MAGRKMSNGAYLKLLLRLAAEGYDLSHPVDLKNHWARHGTNKFVTIK 230
           M GRKMS   + +LL RLAAEG+DLS P+DLK++WA+HGTN+++ IK
Sbjct: 202 MGGRKMSGSVFTRLLSRLAAEGHDLSMPLDLKDYWAKHGTNRYIIIK 248