Jatropha Genome Database

JcCB0060001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0060001.10 + phase: 0 
         (407 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011555001 assembled CDS                                       522   e-148
GSVIVT01024410001 assembled CDS                                       442   e-124
GSVIVT01032376001 assembled CDS                                        76   3e-14
GSVIVT01008517001 assembled CDS                                        73   2e-13
GSVIVT01014838001 assembled CDS                                        66   3e-11
GSVIVT01010166001 assembled CDS                                        60   1e-09
GSVIVT01001806001 assembled CDS                                        59   5e-09
GSVIVT01008186001 assembled CDS                                        57   1e-08

>GSVIVT01011555001 assembled CDS
          Length = 267

 Score =  522 bits (1345), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 248/264 (93%), Positives = 257/264 (97%)

Query: 142 MYEQVKAIKEGIPVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDQRVRDLLDFSIY 201
           MYEQVKAIK+GI VEKPIYNHVTGLLDPPE IKPPKILVIEGLHPMYD RVRDLLDFSIY
Sbjct: 1   MYEQVKAIKDGIAVEKPIYNHVTGLLDPPETIKPPKILVIEGLHPMYDARVRDLLDFSIY 60

Query: 202 LDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQL 261
           LDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQL
Sbjct: 61  LDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQL 120

Query: 262 IPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFAYAPDTY 321
           IPDDNEGKVLRVRLIMKEGV YFSPVYLFDEGSTISWIPCGRKLTCSYPGI F+Y PDTY
Sbjct: 121 IPDDNEGKVLRVRLIMKEGVTYFSPVYLFDEGSTISWIPCGRKLTCSYPGINFSYGPDTY 180

Query: 322 FGHEVSVLEMDGQFDRLDELIYVESHLSNISTKFYGEVTQQMLKHADFPGSNNGTGLFQT 381
           +GHEVSVLEMDGQFDRLDELIYVESHLSNISTKFYGE+TQQ+LKH+DFPGSNNGTGLFQT
Sbjct: 181 YGHEVSVLEMDGQFDRLDELIYVESHLSNISTKFYGEITQQLLKHSDFPGSNNGTGLFQT 240

Query: 382 IVGLKIRDLYEQIVASKAKTPVEA 405
           IVGLKIRDL+EQIVAS+A TP+EA
Sbjct: 241 IVGLKIRDLFEQIVASRAATPLEA 264


>GSVIVT01024410001 assembled CDS
          Length = 273

 Score =  442 bits (1136), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 203/257 (78%), Positives = 231/257 (89%), Gaps = 1/257 (0%)

Query: 142 MYEQVKAIKEGIPVEKPIYNHVTGLLDPPELIKPPKILVIEGLHPMYDQRVRDLLDFSIY 201
           M+EQ++A+K G P+EKPIYNH TGLLDPPELI PPKILV+EGLHP+YD RVRDLLDFSIY
Sbjct: 1   MFEQIEALKHGFPIEKPIYNHATGLLDPPELIHPPKILVLEGLHPLYDSRVRDLLDFSIY 60

Query: 202 LDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQL 261
           LDISNEVKF+WKIQRDMAERGHSLES++ASI+ARK DFDAYI+PQKQYA  V+EVLPTQL
Sbjct: 61  LDISNEVKFSWKIQRDMAERGHSLESVRASIKARKSDFDAYIEPQKQYASVVMEVLPTQL 120

Query: 262 IPDDNEGKVLRVRLIMKE-GVKYFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFAYAPDT 320
           IPDD E KVLRVRLIMKE GVK F P+Y+FDEGSTISW+PCGRKLTCSYPGIKF   P+ 
Sbjct: 121 IPDDTERKVLRVRLIMKESGVKNFQPIYIFDEGSTISWVPCGRKLTCSYPGIKFFCGPEA 180

Query: 321 YFGHEVSVLEMDGQFDRLDELIYVESHLSNISTKFYGEVTQQMLKHADFPGSNNGTGLFQ 380
           YF +EV+VLEMDG+FD+L+EL+YVE HL N+STKFYGEVTQQMLK+ DF GSNNGTG FQ
Sbjct: 181 YFENEVTVLEMDGEFDKLEELVYVEGHLCNVSTKFYGEVTQQMLKNCDFEGSNNGTGFFQ 240

Query: 381 TIVGLKIRDLYEQIVAS 397
           T++ LKIRDLYEQ+  S
Sbjct: 241 TLIALKIRDLYEQVAMS 257


>GSVIVT01032376001 assembled CDS
          Length = 448

 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 71/123 (57%), Gaps = 2/123 (1%)

Query: 134 PRANDFDLMYEQVKAIKEGIPVEKPIYNHVTGL-LDPPELIKPPKILVIEGLHPMYDQRV 192
           P A + +L+   +  +K G  V  P Y+  T   ++P   I    ++++EG+  ++D RV
Sbjct: 86  PDAFNTELLLACMDKLKNGQAVSIPNYDFKTHKNIEPGRKINASDVIILEGILVLHDPRV 145

Query: 193 RDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEA-RKPDFDAYIDPQKQYAD 251
           RDL++  I++D   +V+ A +IQRD  ERG  ++++    +   KP F+ YI P K+YAD
Sbjct: 146 RDLMNMKIFVDTDCDVRLARRIQRDTVERGRDIDNVLDQYDKFVKPSFEEYILPSKKYAD 205

Query: 252 AVI 254
            +I
Sbjct: 206 III 208


>GSVIVT01008517001 assembled CDS
          Length = 472

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 3/124 (2%)

Query: 134 PRANDFDLMYEQVKAIKEGIPVEKPIYNHVTG--LLDPPELIKPPKILVIEGLHPMYDQR 191
           P A D + + + +  +K G  V  PIY+  T     D    +    ++++EG+   +DQ 
Sbjct: 102 PDAFDTEQLLDCIHKLKSGQSVHVPIYDFKTHQRCSDSFRQVNASDVIILEGILVFHDQC 161

Query: 192 VRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESI-KASIEARKPDFDAYIDPQKQYA 250
           VRDL++  I++D   +V+ A +I RD  ERG  ++S+ +   +  KP FD +I P K++A
Sbjct: 162 VRDLMNMKIFVDADADVRLARRISRDTVERGRDIQSVLEQYAKFVKPAFDNFILPSKKFA 221

Query: 251 DAVI 254
           D +I
Sbjct: 222 DVII 225


>GSVIVT01014838001 assembled CDS
          Length = 479

 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 68/124 (54%), Gaps = 3/124 (2%)

Query: 134 PRANDFDLMYEQVKAIKEGIPVEKPIYNHVT--GLLDPPELIKPPKILVIEGLHPMYDQR 191
           P A D + +   ++ +K G  V+ P Y+  +    + P   + P  ++++EG+   +D R
Sbjct: 105 PDAFDTEQLLCAMEKLKHGQAVDIPKYDFKSYKNNVFPARRVNPSDVIILEGILIFHDLR 164

Query: 192 VRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEA-RKPDFDAYIDPQKQYA 250
           VR+L++  I++D   +V+ A +I+RD  E+G  +  +        KP FD +I P K+YA
Sbjct: 165 VRELMNMKIFVDTDADVRLARRIRRDTVEKGRDIGMVLDQYSKFVKPAFDDFILPTKKYA 224

Query: 251 DAVI 254
           D +I
Sbjct: 225 DIII 228


>GSVIVT01010166001 assembled CDS
          Length = 663

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 31/188 (16%)

Query: 63  VVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRT 122
           +++GLA  SG GK+ F  ++ +     A                   VI +D+Y+   R 
Sbjct: 66  ILVGLAGPSGAGKTVFTEKILNFMPSIA-------------------VISMDNYNDASRI 106

Query: 123 --GRKEKGVTALDPRANDFDLMYEQVKAIKEGIPVEKPIYNHVTGLLDPPELIKPP--KI 178
             G  +      DPR  D+D + + V  +K G  V+ PIY+  +        ++ P  +I
Sbjct: 107 VDGNFD------DPRLTDYDTLLQNVHDLKAGKQVQIPIYDFKSSSRTGYRTLEVPSSRI 160

Query: 179 LVIEGLHPMYDQRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASI-EARKP 237
           ++IEG+H +  +++R LLD  + +          ++ RD+   G   E I   I E   P
Sbjct: 161 VIIEGIHAL-SEKMRPLLDLRVSVTGGIHFDLVKRVLRDIQRAGQEPEEIIQQISETVYP 219

Query: 238 DFDAYIDP 245
            + A+I+P
Sbjct: 220 MYKAFIEP 227


>GSVIVT01001806001 assembled CDS
          Length = 226

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 16/123 (13%)

Query: 134 PRANDFDLMYEQVKAIKEGIPVEKPIY---NH--VTGLLDPPELIKPPKILVIEGLHPMY 188
           P A D + + E +  +K G  V  PIY   NH   +G       +    ++++EG+   +
Sbjct: 107 PDAFDTEQLLECIGKLKSGQSVHVPIYDFKNHRRCSGSF---RQVNVSDVIILEGILVFH 163

Query: 189 DQRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEA--------RKPDFD 240
           DQRVR+L++  I++D   +V+ A +I+RD  ERG  + S+   +          RKP  D
Sbjct: 164 DQRVRNLMNMKIFVDTDADVRLARRIRRDTVERGRDVNSVLEQLYVWFLRRRFNRKPLCD 223

Query: 241 AYI 243
            Y+
Sbjct: 224 KYV 226


>GSVIVT01008186001 assembled CDS
          Length = 661

 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 31/193 (16%)

Query: 63  VVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRT 122
           +++G+A  SG GK+    ++ +     A                   VI +D+Y+   R 
Sbjct: 67  ILVGVAGPSGAGKTVLTEKVLNFMPSIA-------------------VISMDNYNDSSRI 107

Query: 123 --GRKEKGVTALDPRANDFDLMYEQVKAIKEGIPVEKPIYNHVTGLLDPPELIKPP--KI 178
             G  +      DPR  D+  + E +  +K G PV+ PIY+  +        +  P  +I
Sbjct: 108 IDGNFD------DPRLTDYGTLLENIHGLKAGKPVQVPIYDFKSSSRIGYRTVDVPSSRI 161

Query: 179 LVIEGLHPMYDQRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASI-EARKP 237
           ++IEG++ +  +R+R LLD  + +          ++ RD+   G   E I   I E   P
Sbjct: 162 VIIEGIYAL-SERLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYP 220

Query: 238 DFDAYIDPQKQYA 250
            + A+I+P  Q A
Sbjct: 221 MYKAFIEPDLQTA 233