Jatropha Genome Database

JcCB0059761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0059761.10 - phase: 0 
         (411 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01002030001 assembled CDS                                       635   0.0  

>GSVIVT01002030001 assembled CDS
          Length = 438

 Score =  635 bits (1639), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/434 (71%), Positives = 356/434 (82%), Gaps = 26/434 (5%)

Query: 1   MSTTQGTHSLAFRVMRLCKPSFHVDAPLRVDPADLIVGEDIFDDPIAASRLPPLIDGQVS 60
           MS+ Q +HSLAFRVMRLC+PSFHVD PLR+DPADL+ GEDIFDDP+AAS LP L+     
Sbjct: 1   MSSGQTSHSLAFRVMRLCRPSFHVDNPLRLDPADLLAGEDIFDDPLAASDLPRLLHNHTL 60

Query: 61  NLTDTSDLTYRTRFLLQHPSDSFGLTGLLVLPQAFGAIYLGETFCSYISINNSSNFEVRD 120
              D SDLTYRTRFLL  PSD+ GL+GLLVLPQ+FGAIYLGETFCSYISINNSSNFEVRD
Sbjct: 61  KSND-SDLTYRTRFLLNDPSDAMGLSGLLVLPQSFGAIYLGETFCSYISINNSSNFEVRD 119

Query: 121 VIIKAEIQTERQRILLLDTSKTPVETIRAGGRYDFIVEHDVKELGAHTLVCTALYNDGDG 180
           V+IKAEIQTE+QRILLLDTSK+PVE+IRAGGRYDFIVEHDVKELGAHTLVC+ALYNDGDG
Sbjct: 120 VVIKAEIQTEKQRILLLDTSKSPVESIRAGGRYDFIVEHDVKELGAHTLVCSALYNDGDG 179

Query: 181 ERKYLPQFFKFIVANPLSVRT-----KETTYLEACIENHTKTSLYMDQVEFEPAQYWNAQ 235
           ERKYLPQFFKF+VANPLSV+T     K+ T+LEACIENHTK++LYMDQVEFEP+Q+W A 
Sbjct: 180 ERKYLPQFFKFVVANPLSVKTKVRIVKDNTFLEACIENHTKSNLYMDQVEFEPSQHWTAT 239

Query: 236 ILKADDNQSEKDSHTRETFKTPILIRSGGGIRNYLYQLRFSSNGSAQ-----SNVLGKLQ 290
           +LKA +  S+ DS TRE FK PILIRSGGGI+NYLYQL+ SS GSAQ     SNVLGKLQ
Sbjct: 240 VLKAGEGLSDNDSPTREIFKQPILIRSGGGIQNYLYQLKLSSQGSAQMKVDGSNVLGKLQ 299

Query: 291 ITWRTNLGEPGRLQTQQILGNPITQKXXXXXXXXXXXXINLDKPFSVHLKLKNHTERELG 350
           ITWRTNLGEPGRLQTQQILG+PIT+K              L++PF VHL L N T+R +G
Sbjct: 300 ITWRTNLGEPGRLQTQQILGSPITRKEIELQVMEVPSVTILERPFLVHLNLTNQTDRTMG 359

Query: 351 PFEVWLSQNDSLDEKAVMINGLQS---------------LNLIAIKLGVQKITGITVFDK 395
           PFEVWLSQ+DS +E+ VM+NGL++               LNLIA KLGVQKITGITVFD 
Sbjct: 360 PFEVWLSQSDSREEQVVMVNGLRAMALPQVEAFCSTDFRLNLIATKLGVQKITGITVFDI 419

Query: 396 KEKKTYDPLPDLEV 409
           +EK+TY+PLPDLE+
Sbjct: 420 REKRTYEPLPDLEI 433