Jatropha Genome Database

JcCB0059751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0059751.10 + phase: 0 /pseudo/partial
         (249 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013241001 assembled CDS                                       364   e-101
GSVIVT01018382001 assembled CDS                                       278   2e-75
GSVIVT01004085001 assembled CDS                                        51   5e-07

>GSVIVT01013241001 assembled CDS
          Length = 397

 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/283 (69%), Positives = 209/283 (73%), Gaps = 52/283 (18%)

Query: 1   VRGCDVYLLQPTCPSANENLMELLIMIDACRRASAKNITAVIPYFGYARV**KD*RS*IY 60
           VRGCDVYL+QPTCP ANENLMELLIMIDACRRASAK +TAV+PYFGYAR           
Sbjct: 131 VRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKTVTAVVPYFGYAR----------- 179

Query: 61  CGQTCRKSYHRSWCKSR---------------SCL*SSFR-------PVHGLF*YFC*PC 98
              + RK+  R    ++               +C   S +       PV  ++   C P 
Sbjct: 180 ---SDRKTQGRESIAAKLVANVITKAGADRVLACDLHSGQSMGYFDIPVDHIY---CQPV 233

Query: 99  VLP-------------VVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIG 145
           +L              VVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIG
Sbjct: 234 ILDYLASKTICCNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIG 293

Query: 146 DVKGKVAVMVDDMIDTAGTIAKGAALLHHEGAREVYACCTHAVFSPPAIERLSSGLFQEV 205
           DVKGKVAVMVDDMIDTAGTI KGAALLH EGAREVYACCTHAVFSPPAIERL+SGLFQEV
Sbjct: 294 DVKGKVAVMVDDMIDTAGTITKGAALLHQEGAREVYACCTHAVFSPPAIERLTSGLFQEV 353

Query: 206 IITNTIPVAEKNYFPQLTVLSVANLLGETIWRIHDDCSVSSIF 248
           IITNTIP  EKNYFPQLTVLSVANLLGETIWRIHDDCSVSSIF
Sbjct: 354 IITNTIPTQEKNYFPQLTVLSVANLLGETIWRIHDDCSVSSIF 396


>GSVIVT01018382001 assembled CDS
          Length = 403

 Score =  278 bits (711), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 136/144 (94%), Positives = 139/144 (96%)

Query: 100 LPVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMI 159
           L VVSPDVGGVARARAFAKKLSDAPLAIVDKRR GHNVAEVMNLIGDVKGKVAVMVDDMI
Sbjct: 248 LIVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMI 307

Query: 160 DTAGTIAKGAALLHHEGAREVYACCTHAVFSPPAIERLSSGLFQEVIITNTIPVAEKNYF 219
           DTAGTIAKGAALLH EGAREVYAC THAVFSPPAI+RLSSGLFQEVIITNTIPV E+NYF
Sbjct: 308 DTAGTIAKGAALLHQEGAREVYACSTHAVFSPPAIQRLSSGLFQEVIITNTIPVLEQNYF 367

Query: 220 PQLTVLSVANLLGETIWRIHDDCS 243
           PQLTVLSVANLLGETIWR+HDDCS
Sbjct: 368 PQLTVLSVANLLGETIWRVHDDCS 391



 Score =  103 bits (257), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 47/49 (95%), Positives = 48/49 (97%)

Query: 1   VRGCDVYLLQPTCPSANENLMELLIMIDACRRASAKNITAVIPYFGYAR 49
           VRGCDVYL+QPTCP ANENLMELLIMIDACRRASAKNITAVIPYFGYAR
Sbjct: 131 VRGCDVYLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYAR 179


>GSVIVT01004085001 assembled CDS
          Length = 393

 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 15/144 (10%)

Query: 102 VVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAEVMNLIGDVKGKVAVMVDDMIDT 161
           +  PD G   R   F K+L   P  +  K R+G N   V    GD KG+  V+VDD++ +
Sbjct: 253 IAFPDDGAWKR---FHKQLQHFPTIVCAKVREG-NQRIVRIKEGDPKGRHVVIVDDLVQS 308

Query: 162 AGTIAKGAALLHHEGAREVYACCTHAVFSPPAIERL--------SSGLFQEVIITNTIP- 212
            GT+ +   +L   GA ++ A  TH +F   + +R         ++GL     IT++ P 
Sbjct: 309 GGTLIQCQKVLASHGAAKISAYVTHGIFPNRSWQRFGEDKGGCPANGL-TYFWITDSCPL 367

Query: 213 -VAEKNYFPQLTVLSVANLLGETI 235
            V E    P   VLS+A+ +  T+
Sbjct: 368 TVKEVKNKPPFEVLSLASSIAATL 391