Jatropha Genome Database

JcCB0059731.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0059731.10 + phase: 0 /partial
         (252 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01031017001 assembled CDS                                       299   8e-82
GSVIVT01011870001 assembled CDS                                       271   3e-73

>GSVIVT01031017001 assembled CDS
          Length = 365

 Score =  299 bits (766), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 145/242 (59%), Positives = 180/242 (74%), Gaps = 1/242 (0%)

Query: 11  ELKDVLRNVPELEELVGGSNAEQFLYFSEQDRDAKVKAILEYIFSQLLSSSREKIFEVIS 70
           ELK VL++VPE+ E+VG ++A Q L  SE+D   KVK++L+ IF+QL+S+++E + ++I+
Sbjct: 105 ELKIVLKDVPEIVEVVGSADANQVLDVSEEDGKEKVKSVLQSIFTQLMSANKEMVSKIIT 164

Query: 71  KIKRRLHLEMQERELTDKEQLVLRLESQYPADTGVIAAFLLNYVKLNRGEALYLGANEPH 130
           K+K RL +E Q R+LTDKEQLVLRLE QYP D GVI+AF  NYVKLN GEALYLGANEPH
Sbjct: 165 KLKIRLQMESQVRQLTDKEQLVLRLEKQYPGDVGVISAFFFNYVKLNPGEALYLGANEPH 224

Query: 131 AYIAGECIECMANSDNVVRVGLTSKRRDIQTLLAMLEYRQGFPEILQGVSLNPYTTRYLP 190
           AY+ GECIECMA SDNVVR GLT K RD+QTL +ML Y+QGFPEILQGV LNPYT RYLP
Sbjct: 225 AYLYGECIECMATSDNVVRAGLTPKHRDVQTLCSMLTYKQGFPEILQGVPLNPYTRRYLP 284

Query: 191 PLDEFEVDLSVIPRAAXXXXXXXXXXXXLLFIMGRGTIAAGFSKDGKAGEGEVLFVPACT 250
           P DEFEVD   +P+ A             +  +G GT   G  ++ + GEG+VLF PA T
Sbjct: 285 PFDEFEVDCCSLPKGASAMFPAVEGPSIFVVTVGEGTAHVGACEE-QVGEGDVLFAPADT 343

Query: 251 EI 252
           EI
Sbjct: 344 EI 345


>GSVIVT01011870001 assembled CDS
          Length = 400

 Score =  271 bits (692), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 138/242 (57%), Positives = 174/242 (71%), Gaps = 3/242 (1%)

Query: 11  ELKDVLRNVPELEELVGGSNAEQFLYFSEQDRDAKVKAILEYIFSQLLSSSREKIFEVIS 70
           ELKDVL  VPE+ EL+G ++AEQ L  +E   + KVKA+LE+IF+QL+SS+++ I E+I 
Sbjct: 140 ELKDVLCGVPEIVELIGKADAEQVLRANEHVGEEKVKAVLEFIFTQLMSSNKDTISELIF 199

Query: 71  KIKRRLHLEMQERELTDKEQLVLRLESQYPADTGVIAAFLLNYVKLNRGEALYLGANEPH 130
           KIK RL++E + + ++    LVLRLE QYP D GVIA+  LN+VKLN G   +LGANEP+
Sbjct: 200 KIKPRLNMEKEVKMVSYLTFLVLRLEGQYPTDVGVIASPFLNHVKLNSG---FLGANEPN 256

Query: 131 AYIAGECIECMANSDNVVRVGLTSKRRDIQTLLAMLEYRQGFPEILQGVSLNPYTTRYLP 190
           AYI GEC ECMA  DNVVR GLTSK +DI+ L +ML Y+QGFPEIL GVS+NPYT RYLP
Sbjct: 257 AYIPGECTECMATLDNVVRAGLTSKHQDIRKLFSMLTYQQGFPEILVGVSMNPYTKRYLP 316

Query: 191 PLDEFEVDLSVIPRAAXXXXXXXXXXXXLLFIMGRGTIAAGFSKDGKAGEGEVLFVPACT 250
           P DEFEVD  ++P+AA             L + G+GTI AGF+ +   GEG VLFVPA  
Sbjct: 317 PFDEFEVDCCILPQAASVVFPSVPGPSPFLIMAGKGTIHAGFAGEHVIGEGSVLFVPANM 376

Query: 251 EI 252
           EI
Sbjct: 377 EI 378