Jatropha Genome Database

JcCB0059061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0059061.10 + phase: 0 /partial
         (246 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01027931001 assembled CDS                                       297   4e-81

>GSVIVT01027931001 assembled CDS
          Length = 1114

 Score =  297 bits (760), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 152/246 (61%), Positives = 178/246 (72%), Gaps = 31/246 (12%)

Query: 1    MGTEYVNGQTKPTWRLIDGICKESLAFETAKKEGIPETIVQRAEELYFSAYAKKVSPERI 60
            MGTEYV+G+TKPTW+LIDGIC+ESLAFETA+KEGIPETI++RAEELY S           
Sbjct: 899  MGTEYVDGKTKPTWKLIDGICRESLAFETAQKEGIPETIIRRAEELYLS----------- 947

Query: 61   EERKRPIHSSGTVNGSNEAHFALTEATARALHHDTKSAKEMEVMQKKDVESAVTLICQRK 120
                  IHS   + G               +    +S  EMEV+ KK VESAVT++CQ+K
Sbjct: 948  ------IHSKDLITGGT-------------ICPKIESTNEMEVLHKK-VESAVTIVCQKK 987

Query: 121  LIELYKQKNTAELETVQCVAIGAREQPPPSTIGASCVYIMFRPDKRLYVGVTDDLEGRVH 180
            L ELYKQKNT++L  + CVAI   EQPPPSTIGAS VY++F  DK+LYVG TDDLEGRV 
Sbjct: 988  LKELYKQKNTSKLPEINCVAILPGEQPPPSTIGASSVYVLFSTDKKLYVGETDDLEGRVR 1047

Query: 181  AHRSKEGMYNASFLYFIVKGKSIACQLETLLINQLPRKGFQLSNIADGKHRNFGTSNLSL 240
            AHRSKEGM  ASFLYF+V GKS+ACQLETLLINQLP +GFQL N ADGKHRNFGT + S+
Sbjct: 1048 AHRSKEGMQKASFLYFVVPGKSLACQLETLLINQLPVQGFQLVNRADGKHRNFGTLDHSV 1107

Query: 241  ETTPVH 246
            E   +H
Sbjct: 1108 EVVTLH 1113