Jatropha Genome Database

JcCB0058711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0058711.10 - phase: 0 
         (363 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01017856001 assembled CDS                                       196   2e-50
GSVIVT01036490001 assembled CDS                                       119   3e-27

>GSVIVT01017856001 assembled CDS
          Length = 335

 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 131/354 (37%), Positives = 178/354 (50%), Gaps = 34/354 (9%)

Query: 14  GFEGFEKRLEITFNEPPIFKDPT-GRGLRALTRSQLDSILEPACCTIVTQLSNSEFDSYV 72
           GFEGFEKRLE+ F+      DP  G GLR L    L+ +L    CT+V+ + N  FD+YV
Sbjct: 5   GFEGFEKRLELHFSG----DDPVVGMGLRHLDFESLEQVLHAVQCTVVSAVGNHYFDAYV 60

Query: 73  LSESSLFVFPFKIVLKTCGTTXXXXXXXXXXXXXXXXXXXXFDVNYSRGSFIFPNYQPAP 132
           LSESSLFV+P KI++KTCGTT                        Y+RGSFIFP  QP P
Sbjct: 61  LSESSLFVYPTKIIIKTCGTTQLLKSIPPLLHHGRHLGLAMCGCRYTRGSFIFPKAQPFP 120

Query: 133 HRSFSEEVTALNEFF-GHLKTEAYVLGGSSAPNWNWHIYSASSGSSQPLMKDHTDTLNVE 191
           H SF +EV  L +     L      +  S   + +WH++SAS                  
Sbjct: 121 HTSFRDEVIYLEQSLPSTLCYRKASVMPSKMSSHSWHVFSASD----------------- 163

Query: 192 ICMTGLEKKKAAVFFKRSADYSASDMTRSSGIFEILPSHLICDFDFDPCGYSMNGIEGTA 251
                 E          + D +  +MT  +GI +I P  LICDF FDPCGYSMNGI+G  
Sbjct: 164 ------EPHMVLQHMPDAGDVAGKEMTELTGIGDINPGALICDFAFDPCGYSMNGIDGDR 217

Query: 252 FSTVHVTPEDGFSYASYEVMG-LEPSQVKLTTLVKRVVNCFGPSEFSIAVTCHGGADKWW 310
           +ST+HVTPEDG+SYAS+E +G +   Q  +  ++K+VV  F P+  S++ TC   + + W
Sbjct: 218 YSTIHVTPEDGYSYASFECVGSIYDDQNDVVQVLKKVVQVFRPATMSVSTTC--TSHEVW 275

Query: 311 PNECDDVD--GYSRRSMVEQELVSGGGRVVVYMTYEMKDKGRLVVPASAKVSMQ 362
                 ++  G   RS    E  + G  V    T   K+K  + V    K+S+ 
Sbjct: 276 TRVATALEPMGLKCRSCAVDEFPAAGSMVFQTFTTRRKEKRLVEVDIKWKLSLN 329


>GSVIVT01036490001 assembled CDS
          Length = 136

 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/129 (48%), Positives = 81/129 (62%), Gaps = 11/129 (8%)

Query: 194 MTGLEKKKAAVFFKRSADYSASDMTRSSGIFEILPSHLICDFDFDPCGYSMNGIEGTAFS 253
           M G   K        +A  SA+ MT +SGI +ILP+  ICDF+FDPCGYSMN IE  A S
Sbjct: 1   MMGSHDKPQKWHVYTAAADSAAVMTENSGIRKILPNSEICDFEFDPCGYSMNAIEEDAIS 60

Query: 254 TVHVTPEDGFSYASYEVMGLEPSQVKLTTLVKRVVNCFGPSEFSIAVTCHGGAD------ 307
           T+HVTPEDGFSYAS+E MG   +   LT +++RV++CF P+ FS+A+  H  ++      
Sbjct: 61  TIHVTPEDGFSYASFEAMGYNLNDDSLTQMLERVLDCFQPAHFSVAL--HADSEECGSPR 118

Query: 308 ---KWWPNE 313
              KW  NE
Sbjct: 119 SILKWRENE 127