Jatropha Genome Database

JcCB0058681.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0058681.20 + phase: 0 /TE/partial
         (85 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01028612001 assembled CDS                                       125   5e-30
GSVIVT01024357001 assembled CDS                                        79   5e-16
GSVIVT01014104001 assembled CDS                                        52   7e-08

>GSVIVT01028612001 assembled CDS
          Length = 3048

 Score =  125 bits (313), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 67/83 (80%)

Query: 3   NLQRCLLTERRMPKNFWPEAARWAVHILNRSSTVAMK*KTPEECWSGLKPNVDYFRVFGC 62
           N+ R +L+ +++PK FWPEA  W VH+LNRS T A++ KTPEE W  LKP+VDYFRVFGC
Sbjct: 626 NMVRSMLSAKKLPKTFWPEAVNWTVHVLNRSPTFAVQNKTPEEAWGKLKPSVDYFRVFGC 685

Query: 63  ICHVHIPDARRTKLEDKSFKAVL 85
           + HVH+PD++RTKL+DKSF  VL
Sbjct: 686 LSHVHVPDSKRTKLDDKSFSCVL 708


>GSVIVT01024357001 assembled CDS
          Length = 851

 Score = 78.6 bits (192), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/82 (42%), Positives = 53/82 (64%)

Query: 4   LQRCLLTERRMPKNFWPEAARWAVHILNRSSTVAMK*KTPEECWSGLKPNVDYFRVFGCI 63
           + + +L E+ +PK FW EA    V++LNR  T A+  KT  E WSG  P+V +F+VFGC+
Sbjct: 532 MAKAMLYEKGLPKFFWVEAVNTVVYLLNRCPTKALLNKTLIEAWSGRNPSVRHFKVFGCL 591

Query: 64  CHVHIPDARRTKLEDKSFKAVL 85
           C+  +P  RR+KL++ S K + 
Sbjct: 592 CYSQVPKERRSKLDETSEKCIF 613


>GSVIVT01014104001 assembled CDS
          Length = 1354

 Score = 51.6 bits (122), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 6    RCLLTERRMPKNFWPEAARWAVHILNRSSTVAMK*KTPEECWSGLKPNVDYFRVFGCICH 65
            R +++   +P + W EA + A++ILNR  + A+  KTP E W+G KP++ +  ++GC   
Sbjct: 987  RSMMSYSSVPISLWGEALKTAMYILNRVPSKAVP-KTPFELWTGRKPSLRHIHIWGCPAE 1045

Query: 66   VHIPDARRTKLEDKS 80
              I +    KL+ ++
Sbjct: 1046 ARIYNPHEKKLDSRT 1060