Jatropha Genome Database

JcCB0058551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0058551.10 - phase: 0 
         (131 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020207001 assembled CDS                                       139   3e-34
GSVIVT01032504001 assembled CDS                                       130   2e-31
GSVIVT01014170001 assembled CDS                                        60   2e-10
GSVIVT01020208001 assembled CDS                                        54   3e-08

>GSVIVT01020207001 assembled CDS
          Length = 491

 Score =  139 bits (351), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 82/114 (71%), Positives = 90/114 (78%)

Query: 4   MGKDXXXXXXXXXXXXGDVSSAPSTASPAKIVSGYFSNAVSAFMKWLWSLKATTKTAITG 63
           MGK             G VSSA +TASPAKIV+G+ S+AV   MKWLWSLKATTKTAI+ 
Sbjct: 1   MGKSVLVLVLTLVVLSGGVSSASATASPAKIVTGFVSDAVPVVMKWLWSLKATTKTAISS 60

Query: 64  RPTMKFESGYTVETVFDGSKLGIEPYSVEVLPGGELLILDSANSNIYRISSSLS 117
           R  MKFESGYTVETVFDGSKLGIEPYS+EVL  GELLILDSANSN+Y+ISSSLS
Sbjct: 61  RSMMKFESGYTVETVFDGSKLGIEPYSIEVLGSGELLILDSANSNLYKISSSLS 114


>GSVIVT01032504001 assembled CDS
          Length = 811

 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/98 (69%), Positives = 76/98 (77%)

Query: 20  GDVSSAPSTASPAKIVSGYFSNAVSAFMKWLWSLKATTKTAITGRPTMKFESGYTVETVF 79
           G  SS  ++   AKIVSG  SN VSA +KWLWSLK+TT TAI+ R  M FE GYTVETVF
Sbjct: 16  GGFSSVSASPPVAKIVSGIVSNVVSALVKWLWSLKSTTNTAISSRSKMNFEDGYTVETVF 75

Query: 80  DGSKLGIEPYSVEVLPGGELLILDSANSNIYRISSSLS 117
           DGSKLGIEPYS+EV   GELL+LDS NSNIY+ISS LS
Sbjct: 76  DGSKLGIEPYSLEVSTSGELLVLDSENSNIYKISSPLS 113


>GSVIVT01014170001 assembled CDS
          Length = 484

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 37  GYFSNAVSAFMKWLWSLKATTKTAITGRPTMKFESGYTVETVFDGSKLGIEPYSVEVLPG 96
           G F    S+ +KW    ++++K   +    ++FE GY VETV +G++LG+ P+S+ V   
Sbjct: 30  GPFVRHFSSLLKWT---RSSSKAPHSDGHVLQFEDGYLVETVVEGNELGVVPHSIRVSED 86

Query: 97  GELLILDSANSNIYRISSSLS 117
           GEL  +D+  +NI RI+  LS
Sbjct: 87  GELFAVDAVKNNIVRITPPLS 107


>GSVIVT01020208001 assembled CDS
          Length = 369

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 5/64 (7%)

Query: 57  TKTAITGRPTMKFESGYTVETVFDGSKLGIEPYSVEVLP---GGELLILDSANSNIYRIS 113
           T  AI G   +  E GYTV TVFDG+KL I P+S  +LP     + +ILDS+ S  Y +S
Sbjct: 18  TIAAIHGSADLVLEDGYTVRTVFDGNKLEINPHS--ILPRYGSSDFIILDSSKSVFYTVS 75

Query: 114 SSLS 117
           S LS
Sbjct: 76  SPLS 79