Jatropha Genome Database

JcCB0058191.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0058191.20 - phase: 0 /partial/short
         (49 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029079001 assembled CDS                                        91   8e-20
GSVIVT01000729001 assembled CDS                                        60   2e-10

>GSVIVT01029079001 assembled CDS
          Length = 496

 Score = 91.3 bits (225), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 42/49 (85%), Positives = 46/49 (93%)

Query: 1   GIAVAIKSGATKAQFDSTVGIHPSAAEEFVTMRSLSRRVTAGNKPKTNL 49
           GIAVA+K GATKAQFD TVGIHPSAAEEFVTMRS++RR+ AGNKPKTNL
Sbjct: 448 GIAVALKCGATKAQFDCTVGIHPSAAEEFVTMRSVTRRIAAGNKPKTNL 496


>GSVIVT01000729001 assembled CDS
          Length = 559

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/46 (56%), Positives = 37/46 (80%)

Query: 1   GIAVAIKSGATKAQFDSTVGIHPSAAEEFVTMRSLSRRVTAGNKPK 46
           G AVA+++G TKA FD+TVGIHP+AAEE VTMR+ +R++   + P+
Sbjct: 501 GFAVAVRAGLTKADFDATVGIHPTAAEELVTMRTPTRKIRNSSPPE 546