Jatropha Genome Database

JcCB0058191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0058191.10 + phase: 0 /partial
         (126 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029077001 assembled CDS                                       213   1e-56

>GSVIVT01029077001 assembled CDS
          Length = 238

 Score =  213 bits (543), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 101/126 (80%), Positives = 110/126 (87%)

Query: 1   EGANGAAVTSVTEISEKQHKVVKEEGATEVEVSQHRVFLLGENRWEEPSRLIGRDKHVHV 60
           EG NGA V SVTEISE Q KV+KEEG TEVEVSQ RVFLLGENRWEEPSRL+GRDK    
Sbjct: 113 EGVNGALVASVTEISEIQQKVLKEEGFTEVEVSQQRVFLLGENRWEEPSRLVGRDKKGGG 172

Query: 61  SKTKETTSKCLSCRGEGRLLCTECDGTGEPNIEPQFLEWVDEGTKCPYCEGLGYTICDVC 120
           +K K+ T+KCL+CRGEGRL+CTECDGTGEPNIEPQFL+WVDEG KCPYCEGLG+TICD C
Sbjct: 173 NKPKDATTKCLTCRGEGRLMCTECDGTGEPNIEPQFLDWVDEGVKCPYCEGLGHTICDAC 232

Query: 121 EGKTMI 126
           EGKT I
Sbjct: 233 EGKTTI 238