Jatropha Genome Database

JcCB0057861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0057861.10 - phase: 1 /TE/partial
         (1102 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012382001 assembled CDS                                       187   2e-47
GSVIVT01013655001 assembled CDS                                       171   2e-42
GSVIVT01031724001 assembled CDS                                       170   3e-42
GSVIVT01000641001 assembled CDS                                       169   8e-42
GSVIVT01028343001 assembled CDS                                       127   4e-29
GSVIVT01009548001 assembled CDS                                       124   4e-28
GSVIVT01013341001 assembled CDS                                       101   3e-21
GSVIVT01018138001 assembled CDS                                        85   2e-16
GSVIVT01010555001 assembled CDS                                        75   1e-13
GSVIVT01015960001 assembled CDS                                        67   4e-11
GSVIVT01011334001 assembled CDS                                        64   5e-10
GSVIVT01026124001 assembled CDS                                        57   3e-08

>GSVIVT01012382001 assembled CDS
          Length = 952

 Score =  187 bits (475), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 88/182 (48%), Positives = 121/182 (66%)

Query: 916  SQFMHTPSITHWQAVKRLFRYVKYTIYHGLFLRRTPASQLYVYTNADWAGDPTDRTSTSG 975
            SQ+MH P++ H   VKR+ RY+K TI  G+ +RR   + +  ++++DWAG+  DR ST+G
Sbjct: 755  SQYMHAPTVVHLCMVKRILRYLKKTIGRGIVMRRNGHTDIIGFSDSDWAGNTIDRRSTTG 814

Query: 976  YITFLGSSPISWSSKKQHTVARSSTEAEYRAVASAVAETNWLQNLLEELQITSFKVPILY 1035
            Y  F+G + +SW SKKQ  VARSS EAEYRA+A+A  E  WL+NLL +L  +      L+
Sbjct: 815  YCMFVGGNLVSWKSKKQPVVARSSAEAEYRAMAAASCEMVWLKNLLTDLGFSPTSPMKLF 874

Query: 1036 CDNVGATYLCQNPVFHSRMKHIAIDFHFVREQVHSKKQIVHHIHSVDQLADSLTKAQTLQ 1095
            CDN  A ++  NPVFH R KHI +D HF+R+QV SK    H+I S DQLAD+ TK  +  
Sbjct: 875  CDNQAAMHIAANPVFHERTKHIEVDCHFIRQQVQSKVIQTHYIRSSDQLADAFTKVLSST 934

Query: 1096 LF 1097
            +F
Sbjct: 935  VF 936


>GSVIVT01013655001 assembled CDS
          Length = 4396

 Score =  171 bits (432), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 81/135 (60%), Positives = 102/135 (75%)

Query: 911  VVNKXSQFMHTPSITHWQAVKRLFRYVKYTIYHGLFLRRTPASQLYVYTNADWAGDPTDR 970
             +NK SQFMH P+  HW AVKRL RY+  T+ HG+ LRRT    L+ ++++DWAG+  D 
Sbjct: 4254 TMNKLSQFMHQPTSDHWNAVKRLLRYLCGTLDHGITLRRTSPLALHAFSDSDWAGNKDDF 4313

Query: 971  TSTSGYITFLGSSPISWSSKKQHTVARSSTEAEYRAVASAVAETNWLQNLLEELQITSFK 1030
            TSTS YI +LG +PISWSSKKQ TVARSSTEAEYR+VAS  AE  W+ +LL EL +T  +
Sbjct: 4314 TSTSAYIIYLGHNPISWSSKKQRTVARSSTEAEYRSVASTAAEIRWICSLLTELGVTLPQ 4373

Query: 1031 VPILYCDNVGATYLC 1045
             P++YCDNVGAT+LC
Sbjct: 4374 QPVIYCDNVGATHLC 4388


>GSVIVT01031724001 assembled CDS
          Length = 1135

 Score =  170 bits (431), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/185 (44%), Positives = 124/185 (67%)

Query: 851  YIFDILQKYNMQDCHCISSPMSITPLLTLNDGSGKIDAQQYREAVGKLQYLSFTRPDISF 910
            YI D+LQ+  + +   ++SPM++  +L++ DG+   D   YR  VG LQY + TRPDI++
Sbjct: 950  YICDLLQRAGLSESKLVTSPMAVGHVLSIADGTRFEDPTLYRSLVGALQYCTITRPDIAY 1009

Query: 911  VVNKXSQFMHTPSITHWQAVKRLFRYVKYTIYHGLFLRRTPASQLYVYTNADWAGDPTDR 970
             +NK  QFMH P+ TH QAVKR+ RY+K ++++GL  + + +  L  YT+AD A  P DR
Sbjct: 1010 TINKFFQFMHAPTSTHLQAVKRVLRYLKGSLFYGLSFQPSSSLDLIAYTDADGASCPDDR 1069

Query: 971  TSTSGYITFLGSSPISWSSKKQHTVARSSTEAEYRAVASAVAETNWLQNLLEELQITSFK 1030
             ST+GY  F   + ISWS+ KQ  V+RSS E++YR +A+A  E  W+Q+LL+EL +  F+
Sbjct: 1070 RSTNGYCIFFRGNLISWSASKQKVVSRSSIESKYRGLANATIELTWIQSLLKELFVPLFQ 1129

Query: 1031 VPILY 1035
             P+L+
Sbjct: 1130 PPVLF 1134


>GSVIVT01000641001 assembled CDS
          Length = 947

 Score =  169 bits (427), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 131/225 (58%)

Query: 877  LTLNDGSGKIDAQQYREAVGKLQYLSFTRPDISFVVNKXSQFMHTPSITHWQAVKRLFRY 936
            L  + G  K+D+  Y++ VG L YL+ TRPDI   V+  S++M  P+  H+ A K++ RY
Sbjct: 222  LNKDHGGKKVDSIIYKQIVGSLMYLTATRPDIMHSVSLISRYMENPTELHFLAAKKICRY 281

Query: 937  VKYTIYHGLFLRRTPASQLYVYTNADWAGDPTDRTSTSGYITFLGSSPISWSSKKQHTVA 996
            ++ T   GLF ++   S L  +T++D+AGD  +R STSGY+  LG+  +SWSSKKQ  V 
Sbjct: 282  LQGTKDFGLFYKKGKRSDLIGFTDSDYAGDQDNRRSTSGYVFMLGTGAVSWSSKKQPIVT 341

Query: 997  RSSTEAEYRAVASAVAETNWLQNLLEELQITSFKVPILYCDNVGATYLCQNPVFHSRMKH 1056
             S+TEAE+ A      +  WL+ +LEEL +       ++CDN     L +NPV H R KH
Sbjct: 342  LSTTEAEFVAATVCACQAIWLRKILEELHLKQVGATTIFCDNSSTIKLSKNPVLHGRSKH 401

Query: 1057 IAIDFHFVREQVHSKKQIVHHIHSVDQLADSLTKAQTLQLFSHHR 1101
            I + ++F+R+  +     + +  S +Q+AD  TK   L +F   R
Sbjct: 402  IDVKYYFLRDLSNDGVIDLVYCRSENQVADIFTKPLKLAVFLELR 446


>GSVIVT01028343001 assembled CDS
          Length = 2295

 Score =  127 bits (318), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 64/123 (52%), Positives = 81/123 (65%)

Query: 969  DRTSTSGYITFLGSSPISWSSKKQHTVARSSTEAEYRAVASAVAETNWLQNLLEELQITS 1028
            DR STSGY  F+G + ISW SKKQ  VARSS EAEYRA+A A  E  WL++LL+EL+   
Sbjct: 1466 DRRSTSGYCVFIGGNLISWKSKKQDVVARSSAEAEYRAMALATCELIWLRHLLQELRFGK 1525

Query: 1029 FKVPILYCDNVGATYLCQNPVFHSRMKHIAIDFHFVREQVHSKKQIVHHIHSVDQLADSL 1088
             +   L CDN  A ++  NPVFH R KHI +D HF+RE++ S       ++S DQLAD  
Sbjct: 1526 DEQMKLICDNQAALHIASNPVFHERTKHIEVDCHFIREKIASGCVATSFVNSNDQLADIF 1585

Query: 1089 TKA 1091
            TK+
Sbjct: 1586 TKS 1588


>GSVIVT01009548001 assembled CDS
          Length = 849

 Score =  124 bits (310), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/213 (33%), Positives = 111/213 (52%), Gaps = 3/213 (1%)

Query: 891  YREAVGKLQYL-SFTRPDISFVVNKXSQFMHTPSITHWQAVKRLFRYVKYTIYHGLFLRR 949
            Y  A+G L Y  +  RP+I F+VN   +++      HW A K++ RY++ T    L  RR
Sbjct: 596  YASAIGSLMYAQACIRPNIVFIVNVLGRYLSNLGQYHWVAAKKVMRYLQRTNDFMLVYRR 655

Query: 950  TPASQLYVYTNADWAGDPTDRTSTSGYITFLGSSPISWSSKKQHTVARSSTEAEYRAVAS 1009
                ++  Y+N+D+ G   D  STSGYI  L    ISW S KQ  +A S+  A++ A   
Sbjct: 656  VDNLEVVGYSNSDFNGCSDDCKSTSGYIFMLTGGAISWKSVKQSLIAFSTMYAKFVACYG 715

Query: 1010 AVAETNWLQNLLEELQITS--FKVPILYCDNVGATYLCQNPVFHSRMKHIAIDFHFVREQ 1067
            A ++  WL+ L+ ELQ+    F+  ++YCDN    +  +N    +  KH+ I +  V++ 
Sbjct: 716  ASSQVVWLRKLISELQVVDSIFRPIVIYCDNNATVFYSKNNKISTSSKHMEIKYLIVKDL 775

Query: 1068 VHSKKQIVHHIHSVDQLADSLTKAQTLQLFSHH 1100
            V  +  ++ HI +   LAD LTK     +F  H
Sbjct: 776  VKKEDIVIKHIRTESMLADPLTKGLKPIMFKEH 808


>GSVIVT01013341001 assembled CDS
          Length = 503

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 70/109 (64%)

Query: 919  MHTPSITHWQAVKRLFRYVKYTIYHGLFLRRTPASQLYVYTNADWAGDPTDRTSTSGYIT 978
            MH+P   H   V ++ +Y+K T   GL   +    ++  +T+ADWAG   DR STSGY T
Sbjct: 1    MHSPYEAHMNVVYKILQYLKGTPRKGLHFGKHDQFKIEAFTDADWAGSIEDRRSTSGYCT 60

Query: 979  FLGSSPISWSSKKQHTVARSSTEAEYRAVASAVAETNWLQNLLEELQIT 1027
            F+  + I+W SKKQ+ VARSS E ++R++A  + E  W++ +LEEL+IT
Sbjct: 61   FVFGNLITWRSKKQNVVARSSAEVKFRSIAHGICEVLWIKRVLEELKIT 109


>GSVIVT01018138001 assembled CDS
          Length = 98

 Score = 85.1 bits (209), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 63/86 (73%)

Query: 767 LLSYGFHESKSNSSLFLLHKSTAMLYILVYVDDIIITGNSNSALTHVINALSNHFSLKDL 826
           LLS+GF  +KS+ SLFL    + + Y+ VYVDDI++T +  +A+T +I  L++ FSLKDL
Sbjct: 13  LLSFGFVSTKSDQSLFLRFTPSHITYVFVYVDDILVTSSDTTAITSLIAQLNSKFSLKDL 72

Query: 827 GQLHYFLGVEVLHQPEGIYLSHSKYI 852
           G++HYFL ++V +   G++LS +KYI
Sbjct: 73  GEVHYFLVIQVSYTNNGLHLSQTKYI 98


>GSVIVT01010555001 assembled CDS
          Length = 147

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 2/89 (2%)

Query: 710 LDVNNAFLQGKLEDEVYMRQPKGFIHPDFPNYVCKLKKAIYGLRQAPRAWYMALKNFLLS 769
           +DV NAFL G L +EVYM+ P G       N VC L++A+YGL+QAPRAW+    + +  
Sbjct: 1   MDVKNAFLNGDLSEEVYMQPPPGLSVES--NKVCHLRRALYGLKQAPRAWFAKFSSTIFR 58

Query: 770 YGFHESKSNSSLFLLHKSTAMLYILVYVD 798
            G+  S  +S+LFL       + +L+Y +
Sbjct: 59  LGYTASPYDSALFLRRTDKGTILLLLYSN 87


>GSVIVT01015960001 assembled CDS
          Length = 1205

 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 46/76 (60%)

Query: 1016 WLQNLLEELQITSFKVPILYCDNVGATYLCQNPVFHSRMKHIAIDFHFVREQVHSKKQIV 1075
            W++ LLEEL++T      LYCDN     +  NPV H R KH+ +D HF++E++ +    +
Sbjct: 2    WIRRLLEELKMTGSSPMKLYCDNKAVISVAYNPVLHDRTKHVEVDKHFIKEKIDNGLVCM 61

Query: 1076 HHIHSVDQLADSLTKA 1091
             +I + +Q+AD  TK 
Sbjct: 62   TYIPTEEQVADVFTKG 77


>GSVIVT01011334001 assembled CDS
          Length = 640

 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 12/115 (10%)

Query: 761 MALKNFLL-----------SYGFHESKSNSSLFLLHKSTA-MLYILVYVDDIIITGNSNS 808
           M LKN L             +G+    S+ +LF+ H        I+VYV DII+T +   
Sbjct: 1   MVLKNLLELGFDHFTKVVKGFGYSWCHSDHTLFVKHTVKGRTAIIIVYVGDIILTKDHEE 60

Query: 809 ALTHVINALSNHFSLKDLGQLHYFLGVEVLHQPEGIYLSHSKYIFDILQKYNMQD 863
            +  + +  ++ F +KDLG L YF G+E+     GI +S  KY+ D+L +  M D
Sbjct: 61  EIGKLKSIFAHEFEIKDLGNLKYFFGMEITRSNMGIVVSQCKYVLDLLTEIEMLD 115


>GSVIVT01026124001 assembled CDS
          Length = 1018

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)

Query: 1016 WLQNLLEELQITSFKVPILYCDNVGATYLCQNPVFHSRMKHIAIDFHFVREQVHSKKQIV 1075
            WL  LL+EL     ++ IL+ D+  A +L +N VFHS+ KHI   +HF+R  +  K  I+
Sbjct: 3    WLHGLLDELAKKQ-EMRILHSDSHSAIFLAKNSVFHSKSKHIQTKYHFIRYLIEDKLVIL 61

Query: 1076 HHIHSVDQLADSLTKAQTLQ 1095
              I+     AD LTK  T++
Sbjct: 62   EKIYGSKNPADMLTKGVTIE 81