Jatropha Genome Database

JcCB0057761.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0057761.30 - phase: 0 
         (71 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015097001 assembled CDS                                       114   6e-27

>GSVIVT01015097001 assembled CDS
          Length = 223

 Score =  114 bits (286), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 62/72 (86%), Gaps = 1/72 (1%)

Query: 1   MEKGRQVMEEFFDIWQEAISKRSLPGHFMHIEPNFAEYGLLDQYSSQHTAVQYATVVAQL 60
           MEK RQ+++ F +IWQEA+SKRSLPGHFMHIEPNFAE+GL D Y+SQHTAVQYATV+AQL
Sbjct: 152 MEKSRQILDGFVEIWQEAMSKRSLPGHFMHIEPNFAEFGLSDHYTSQHTAVQYATVMAQL 211

Query: 61  I-ATQSVQATRN 71
           I A Q+ Q  RN
Sbjct: 212 ISAVQTAQGVRN 223