Jatropha Genome Database

JcCB0057761.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0057761.10 + phase: 2 /partial
         (62 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035095001 assembled CDS                                        98   8e-22

>GSVIVT01035095001 assembled CDS
          Length = 1121

 Score = 97.8 bits (242), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 46/63 (73%), Positives = 54/63 (85%), Gaps = 1/63 (1%)

Query: 1    DLGIAPQKLESYQNGEIEKTDPMERLQAVRGHLVSLPLDFMSKEDLRPVFNESEYYAS-H 59
            DLGIAP KLESY NG+++  +PMERL++V+GHLV  PLDFM KEDLRPVFNESEYYAS  
Sbjct: 1059 DLGIAPMKLESYDNGDMKTIEPMERLESVKGHLVYFPLDFMCKEDLRPVFNESEYYASPQ 1118

Query: 60   VFY 62
            VF+
Sbjct: 1119 VFH 1121