Jatropha Genome Database

JcCB0057531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0057531.10 + phase: 0 
         (414 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008137001 assembled CDS                                        68   7e-12
GSVIVT01020465001 assembled CDS                                        62   6e-10

>GSVIVT01008137001 assembled CDS
          Length = 552

 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 120/300 (40%), Gaps = 52/300 (17%)

Query: 40  DCISNILIRLPLESLQSSRFVCKPWYNIINSPIFIDAHLRRSESVLIFLESVQNERYPYL 99
           + IS IL RLP+E +   R VCK W ++I SP+FI+   R+S +                
Sbjct: 157 ELISEILSRLPIELILRCRSVCKTWNSVIQSPLFINLQARKSHN---------------- 200

Query: 100 ERSMPTQKPNYFSVESSFLQSKPVPIFGQPVNTLPKFRIQFLEFKEGKSKVTEYKVSCLG 159
           + S    KP +  V ++ + S               F +   E K  +     ++ S L 
Sbjct: 201 QPSRVILKPIFGGVTATTMHSL--------------FLLDTEERKSRRIHDKSWRFSGLQ 246

Query: 160 LIRATCNXXXXXXXXXXXXXXXVMNPVTRKLMALPL-GTIYPPQNESYGFALSNTTGEYK 218
           ++ ++CN               + NP+TR+ + LP   T +       G    ++ G+Y 
Sbjct: 247 IM-SSCNGLLCITSDSELGPVYISNPITREFVILPSPETGFSLLRHQVGLGFDSSNGKYI 305

Query: 219 VVHLFRDELGYV--SCEILNIGTRFWREVNGPSF-------GLFGWFGYEPVSAIGALHW 269
           VV  + D+        E + +G   WR +  P         G   W         GALHW
Sbjct: 306 VVRAYTDKSKSQVNKFEAIMLGENSWRSLTVPDIIAECTINGSVFWN--------GALHW 357

Query: 270 -VPQVDHNDYIVSMEVDNEKFHTIRLPENCRTYD--RIIEMAGLLCLVVHEELNIDIWNL 326
            + +    + ++S +V + KF   R P +    D   ++E+ G L LV   +  + IW +
Sbjct: 358 KIKKKPGRECMLSFDVSSGKFAVTRFPVSADVPDDFEMVELDGHLSLVQVYDTQMKIWRV 417


>GSVIVT01020465001 assembled CDS
          Length = 265

 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 88/210 (41%), Gaps = 18/210 (8%)

Query: 182 VMNPVTRKLMALPLGTIYPPQNESYGFALSNTTGEYKVVHLFRDELGYVSCEILNIGTRF 241
           + NP T +++ LP         E  G A      EYKV   +     Y  CE+ +  T  
Sbjct: 39  ICNPATGEVLLLPQSRELEHPGE-VGVAFGPGINEYKVFQFYGGTQHY-GCEVYSSITGS 96

Query: 242 WREVNGPSFGLFGWFGYEPVSAIGALHWVPQVDHNDYIVSMEVDNEKFHTIRLPENCRTY 301
           W+ +   +   +  F    V   G ++W  + +     + +    E F TIRLP+     
Sbjct: 97  WKSIGRVAHTPYSSFSSNHVCINGIVYWFTRSEEGSGSILVVNREEIFSTIRLPKEKILR 156

Query: 302 DRIIEMAGLLCLVVH---EELNIDIWNLKSIGEGVWTKQYSITRGSVLDMVPMFSLR-IS 357
             +I + G LCLVV    EE   DIW L+   E +WTK++S       D +P  S+  I 
Sbjct: 157 PYLINLEGCLCLVVDNGLEEYRFDIWALQDSKESLWTKKWS-------DYMPFCSIADII 209

Query: 358 GDIIFKRAE-----DGSFYAYDFRFQEMRK 382
             ++ ++ E        F+ Y+   +  RK
Sbjct: 210 NHVVVRKNEILLGTITHFFLYNMGTRTWRK 239