Jatropha Genome Database

JcCB0057251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0057251.10 - phase: 0 
         (390 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035666001 assembled CDS                                       306   8e-84
GSVIVT01035689001 assembled CDS                                       204   4e-53
GSVIVT01038251001 assembled CDS                                        49   3e-06

>GSVIVT01035666001 assembled CDS
          Length = 391

 Score =  306 bits (785), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 159/262 (60%), Positives = 194/262 (74%), Gaps = 15/262 (5%)

Query: 1   MAMPSLDEGTAKEVLRQVEFYSATAICRETNFMKNTINSSEDGSILTLEYDCVKTVVSLA 60
           M   S DE T K+V+RQVEFY + +     NF+K TI+ SEDG            +VSLA
Sbjct: 1   MGTASFDEETVKKVIRQVEFYFSDSNLPRDNFLKKTISESEDG------------LVSLA 48

Query: 61  LICSFKKMKGYLKLNDVKPEEIPEDTLKAVAETLRKSTSLKVSEDGKKVGRIAALLKPDE 120
           LICSF +M+ +L L DVKPE++ EDTLKAVAE LR ST+LKVSEDGKK+GR   LLKP+E
Sbjct: 49  LICSFSRMRSHLNLGDVKPEDVSEDTLKAVAEILRNSTTLKVSEDGKKIGRATELLKPEE 108

Query: 121 AIEQLDGRTVAASPLGYDVKREDVESFFGKYAKVTSVRLPRHVADKRVFCGTALIEFSTE 180
            +EQ+D RT+AASPL YD K EDVE++FG++AKV SVRLPRHVA+KRVFCGTALIE+STE
Sbjct: 109 VVEQVDIRTIAASPLEYDAKLEDVEAYFGQFAKVNSVRLPRHVAEKRVFCGTALIEYSTE 168

Query: 181 EDTENILKQSLVFDGVQLELKPKKEFDADRAELEEEFKN-RPLTGXXXXXXXXAEAAYPK 239
           ED   +L+QSLV+ GV+LELKPKK+FDA+RA+  EEF+N R L G        AE+ YPK
Sbjct: 169 EDAAKVLQQSLVYAGVELELKPKKDFDAERAQQTEEFENSRALLGSNRKNNSNAESTYPK 228

Query: 240 GLIVAFTLKGLSAGGSVGHDQE 261
           GLIV+FTLK   AG + G D E
Sbjct: 229 GLIVSFTLK--RAGENSGEDIE 248


>GSVIVT01035689001 assembled CDS
          Length = 261

 Score =  204 bits (520), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 96/138 (69%), Positives = 118/138 (85%)

Query: 56  VVSLALICSFKKMKGYLKLNDVKPEEIPEDTLKAVAETLRKSTSLKVSEDGKKVGRIAAL 115
           +VSLALICSF +M+ +L L DVKPE++ EDTLKAVAE LR ST+LKVSEDGKK+GR   L
Sbjct: 33  LVSLALICSFSRMRSHLNLGDVKPEDVSEDTLKAVAEILRNSTTLKVSEDGKKIGRATEL 92

Query: 116 LKPDEAIEQLDGRTVAASPLGYDVKREDVESFFGKYAKVTSVRLPRHVADKRVFCGTALI 175
           LKP+E +EQ++ RT+AASPL YD K EDVE++FG+ AKV SVRLPRHVA+KRVFCGTALI
Sbjct: 93  LKPEEVVEQVNIRTIAASPLEYDAKLEDVEAYFGQIAKVNSVRLPRHVAEKRVFCGTALI 152

Query: 176 EFSTEEDTENILKQSLVF 193
           ++STEED   +L+QSLV+
Sbjct: 153 QYSTEEDAAKVLQQSLVY 170


>GSVIVT01038251001 assembled CDS
          Length = 325

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 14/102 (13%)

Query: 57  VSLALICSFKKMKGYLKLNDVKPEEIPEDTLKAVAETLRKSTSLKVSEDGKKVGRIAALL 116
           V ++++ SFKK+K  +             +   +A  LR ST L VSEDGKKV R+  L 
Sbjct: 42  VPISVVASFKKIKALV------------SSHSQLATVLRNSTKLVVSEDGKKVRRLHPLT 89

Query: 117 KPDEAIEQLDGRTVAASPLGYDVKREDVESFFGKYAKVTSVR 158
           + D  +E+L  R V A  L  D   +++   F     V ++R
Sbjct: 90  ESD--MEELQSRIVVAENLPEDHCHQNLMKIFSAVGSVKTIR 129