Jatropha Genome Database

JcCB0057111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0057111.10 + phase: 0 /TE/pseudo/partial
         (174 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018616001 assembled CDS                                        71   3e-13

>GSVIVT01018616001 assembled CDS
          Length = 296

 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 49/93 (52%), Gaps = 17/93 (18%)

Query: 86  CPCGRGKCRIFTSHTQANPERKFYTCPVDKSSGSCGFFKWCDELS---------ITPPI- 135
           CPCG G C I TS+TQ NP RKFY CP+ + +G CGFF+WCD  S         I P + 
Sbjct: 95  CPCGLGTCLILTSNTQKNPGRKFYKCPLREENGGCGFFQWCDNSSGISNDAFGAINPGLN 154

Query: 136 -------CPCGAGFCSLNRDSTSPYEEKWYFAC 161
                  CPCGAG C +    T     + ++ C
Sbjct: 155 SSFPDLKCPCGAGSCLILTAKTGNNAGQQFYRC 187



 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 4/80 (5%)

Query: 84  IRCPCGRGKCRIFTSHTQANPERKFYTCPVDKSSGSCGFFKWCDELSITPPICPCGA--G 141
           ++CPCG G C I T+ T  N  ++FY CP ++  GSCGFFKWC++ ++ P   P GA  G
Sbjct: 160 LKCPCGAGSCLILTAKTGNNAGQQFYRCPANQ-GGSCGFFKWCNDQTV-PAGLPVGASRG 217

Query: 142 FCSLNRDSTSPYEEKWYFAC 161
           + +    S   Y  +   +C
Sbjct: 218 YNTTTNASIKSYGAQSGSSC 237