Jatropha Genome Database

JcCB0056061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0056061.10 - phase: 0 
         (71 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01024029001 assembled CDS                                        71   9e-14
GSVIVT01009947001 assembled CDS                                        71   1e-13
GSVIVT01018729001 assembled CDS                                        70   2e-13
GSVIVT01020653001 assembled CDS                                        68   7e-13
GSVIVT01021145001 assembled CDS                                        68   9e-13
GSVIVT01018319001 assembled CDS                                        65   7e-12
GSVIVT01015359001 assembled CDS                                        65   8e-12
GSVIVT01007804001 assembled CDS                                        61   1e-10

>GSVIVT01024029001 assembled CDS
          Length = 198

 Score = 71.2 bits (173), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 33/33 (100%), Positives = 33/33 (100%)

Query: 1  MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT 33
          MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT
Sbjct: 1  MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT 33


>GSVIVT01009947001 assembled CDS
          Length = 197

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/33 (100%), Positives = 33/33 (100%)

Query: 1  MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT 33
          MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT
Sbjct: 1  MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT 33


>GSVIVT01018729001 assembled CDS
          Length = 196

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/33 (96%), Positives = 33/33 (100%)

Query: 1  MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT 33
          MSASRFIKCVTVGDGAVGKTC+LISYTSNTFPT
Sbjct: 1  MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPT 33


>GSVIVT01020653001 assembled CDS
          Length = 196

 Score = 68.2 bits (165), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/33 (93%), Positives = 32/33 (96%)

Query: 1  MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT 33
          MS +RFIKCVTVGDGAVGKTCMLISYTSNTFPT
Sbjct: 1  MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPT 33


>GSVIVT01021145001 assembled CDS
          Length = 171

 Score = 67.8 bits (164), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/33 (93%), Positives = 32/33 (96%)

Query: 1  MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT 33
          MS +RFIKCVTVGDGAVGKTCMLISYTSNTFPT
Sbjct: 1  MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPT 33


>GSVIVT01018319001 assembled CDS
          Length = 198

 Score = 64.7 bits (156), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 29/31 (93%), Positives = 30/31 (96%)

Query: 3  ASRFIKCVTVGDGAVGKTCMLISYTSNTFPT 33
           SRFIKCVTVGDGAVGKTC+LISYTSNTFPT
Sbjct: 5  PSRFIKCVTVGDGAVGKTCLLISYTSNTFPT 35


>GSVIVT01015359001 assembled CDS
          Length = 210

 Score = 64.7 bits (156), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 30/33 (90%), Positives = 31/33 (93%)

Query: 1  MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPT 33
          MSAS+FIKCVTVGDGAVGKTCMLI YTSN FPT
Sbjct: 1  MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPT 33


>GSVIVT01007804001 assembled CDS
          Length = 210

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/35 (82%), Positives = 31/35 (88%)

Query: 2  SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTVCI 36
          SAS+FIKCVTVGDGAVGKTCMLI YTSN FP+  I
Sbjct: 4  SASKFIKCVTVGDGAVGKTCMLICYTSNKFPSDYI 38